PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G05260.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family WRKY
Protein Properties Length: 505aa    MW: 51837.9 Da    PI: 7.0492
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G05260.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.81.2e-29249308159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      ++Dg++WrKYGqK  kg+++pr+YYrCt a +Cpv+k+v+r+a+d +++++tYeg+H h+
  LPERR01G05260.1 249 MNDGCQWRKYGQKISKGNPCPRAYYRCTVApNCPVRKQVQRCADDMSILITTYEGTHSHP 308
                      58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.4E-31234310IPR003657WRKY domain
SuperFamilySSF1182903.4E-27242310IPR003657WRKY domain
PROSITE profilePS5081127.772244310IPR003657WRKY domain
SMARTSM007746.6E-36249309IPR003657WRKY domain
PfamPF031062.0E-26250308IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 505 aa     Download sequence    Send to blast
MDVVVESPPV RDEKKVDTAM IGGAPPIVFE SFASTQRDST IIKKEEKIEL TKAEMGEVRE  60
ENERLKTMLS RIVSDYQSLQ MHFLGVVKVK DQSAADENPP AAAELAADEP DDLVSLRLCT  120
RPNAAAGAAA AKRRKGNHER TSSSSSSAAG GEEDDVDGRL SLGLRCAISD EDAGGEVKAA  180
AATVMNLSSD SSGHAAGAGE ATQPITNKAS RSSSGGGGGG EGADDEVMQQ QQAKKARVSV  240
RVKCDTPTMN DGCQWRKYGQ KISKGNPCPR AYYRCTVAPN CPVRKQVQRC ADDMSILITT  300
YEGTHSHPLP PAAAAMASTT SAAAAMLTSG STTSTMHHMP FGGAGAGIFA GGPTTISTAT  360
SCPTVTLDLT APPHSLPHHH HHPYAAAAGG FDHGSSRALP AAWSSGYLAY GGIGAAARPS  420
PFGQFGGMVA ARPAPPEMHL FGAGGGQTAT ASAAYMQRGI GGGAPAAVTD TIAKAITSDP  480
SFQSVLAAAI TSYMGRAGGA AAQNK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A7e-22236312176WRKY transcription factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1233242KKARVSVRVK
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR01G05260.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2892401e-159AK289240.1 Oryza sativa Japonica Group cDNA, clone: J100075H09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015625260.10.0probable WRKY transcription factor 72
TrEMBLA0A0D9UXN50.0A0A0D9UXN5_9ORYZ; Uncharacterized protein
STRINGLPERR01G05260.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP120812938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.11e-44WRKY DNA-binding protein 72