PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G05320.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family MYB_related
Protein Properties Length: 897aa    MW: 100302 Da    PI: 4.97
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G05320.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding223.7e-07747788144
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 
                      r +W++ + +l++++ +q+G++ ++ I + ++  ++++q++ ++
  LPERR01G05320.1 747 RAKWSKSDTDLFYQGLRQFGSD-FAMIQHLFP-DKSRNQVRQKF 788
                      569*******************.*********.********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.5E-9738794IPR009057Homeodomain-like
PfamPF159631.0E-24740821No hitNo description
SMARTSM007172.9E-8746794IPR001005SANT/Myb domain
CDDcd001674.17E-6749789No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 897 aa     Download sequence    Send to blast
MAYSPLNYNF YYVECCIGTS KLFLGHHNGD YIEMIDDEAD FGNIIDASAE GQTAAKFRPK  60
VRTKPRKTSV PSRSLASQPT VESTDAKVKI LDKDNTSQEQ SIDKKTALLG YHGSETFGDA  120
CASGGMLDIP SEDAVTVSLG LVSNPDGALD SSTVCASSVH KFSENEEHID DSSHVATHKE  180
SMVVLDTQTP PTCSSGKTID DLADFEGMCD VTQVEEERVA KFQPKIRAKT SKATSKSGRS  240
DQKAGAFTGD VILQSKEDGK NHAGCSDKQL HPPTRHQESV QIPYSQAHLG THDSTIDGIV  300
NLDSIIEEPA QKEMAAKFQP NLRPKAGGAS PGVAETSDAT AVVTPAFGIS SVDVVSQDAE  360
EDSHREGFRD DSCQKHMDEE VITVSDTGPP QDLDATVDLD SHAEMLNSHP DGSLPIIGER  420
SVEATFKFQS YVRRKKGKEK SVSFAPPNDS DVVTPTDTNS DRSNLSHFCQ DITIGENLSN  480
LPQKATEKLC INDEHHPDDQ EYNDPENQFP EGEPSDHVIQ QELKRDARET GTSMKLRSRE  540
KLQKDGIPEH IADDNMDEDF AEPPSEEQDN DSGDEYSARG KQRGRRKPRN KNIDKEPLRG  600
TKRTLGDSTI EESQKQKVQK NKSKASSGGQ KETSKDSSVE KPEKKLTHRI RQKRMKEVKT  660
LLETPDHEIN RMKLGVTHLR LLQEAKERIK GKEIPSGLSS SNHSSQFEDM DDGYNEQENW  720
DNDRTENHVV ENTTKLNYHS YMNRQTRAKW SKSDTDLFYQ GLRQFGSDFA MIQHLFPDKS  780
RNQVRQKFKA EEKRHPMQVH DAIMHRSRDN LYFKQVIKQL NIEDVQTDVN NTHGQEGTSN  840
EKDPGKKNMS GEFINEEEEN SSNWSDKDLG MHGSEFEEKE HFSANADDDL GDVFDWY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1582588RGRRKPR
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR01G05320.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0968560.0AC096856.7 Oryza sativa chromosome 3 BAC OSJNBa0075M12 genomic sequence, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633004.10.0uncharacterized protein LOC9267825
TrEMBLA0A0D9UXP40.0A0A0D9UXP4_9ORYZ; Uncharacterized protein
STRINGLPERR01G05320.20.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25952946
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39160.13e-36MYB_related family protein