PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G05580.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family C3H
Protein Properties Length: 335aa    MW: 36032.4 Da    PI: 6.3966
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G05580.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.22.8e-08117137526
                      --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                       C++f++ G Ck+Gd+C +aHg
  LPERR01G05580.1 117 ACPDFRK-GGCKRGDSCEYAHG 137
                      7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.2E-5112138IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.404113139IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.1E-6116139IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-6117137IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.343147171IPR000571Zinc finger, CCCH-type
SMARTSM0035612147170IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0010150Biological Processleaf senescence
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MMMMGEGLTS GVPPWSSHLP VSGVDAGAGD EMTPYLLAAL REYLPSNSDI GGDDEEEAAA  60
MAAAVDAYAC DEFRMYEFKV RRCARGRSHD WTECPFAHPG EKARRRDPRK YHYSGTACPD  120
FRKGGCKRGD SCEYAHGVFE CWLHPARYRT QPCKDGTACR RRVCFFAHTP EQLRVLPPTT  180
QQMSSPRSPV AESYDGSPLR RQAFESYLTK TIMSSSPTST LMSPPRSPPS ESPPLSPDGA  240
AYGSPKAAAA AGGIYSLPST PLSSTAASFV PNLEPIDLGL IGGEEPVKRV ESGRALREKV  300
FERLSRDGAV SVSGDSAAAA AGVGVDVAWV SDLIN
Functional Description ? help Back to Top
Source Description
UniProtInvolved in leaf senescence delay. May repress jasmonic acid (JA) signaling role in promoting leaf senescence. May regulate panicle development and pollination/fertilization process. {ECO:0000269|PubMed:16778011}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR01G05580.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025879384.11e-165zinc finger CCCH domain-containing protein 2
SwissprotQ9FU271e-166C3H2_ORYSJ; Zinc finger CCCH domain-containing protein 2
TrEMBLA0A0D9UXT00.0A0A0D9UXT0_9ORYZ; Uncharacterized protein
STRINGLPERR01G05580.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15783493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25900.23e-74C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Mebel AM,Kislov VV,Hayashi M
    Prediction of product branching ratios in the C(3P)+C2H2-->l-C3H+H/c-C3H+H/C3+H2 reaction using ab initio coupled clusters calculations extrapolated to the complete basis set combined with Rice-Ramsperger-Kassel-Marcus and radiationless transition theories.
    J Chem Phys, 2007. 126(20): p. 204310
    [PMID:17552765]
  3. Miyazawa T,Shibata A,Nakagawa K,Tsuzuki T
    Anti-angiogenic function of tocotrienol.
    Asia Pac J Clin Nutr, 2008. 17 Suppl 1: p. 253-6
    [PMID:18296349]