PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR01G05630.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

MYB_related

Protein Properties

Length: 300aa MW: 32025.1 Da PI: 10.44

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR01G05630.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	47.5	4.1e-15	119	163	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ +++ + ++lG+g+W+ I+r++ +Rt+ q+ s+ qky LPERR01G05630.1 119 PWTEEEHRKFLVGLEKLGKGDWRGISRHFVPTRTPTQVASHAQKY 163 8*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50158	8.68	3	18	IPR001878	Zinc finger, CCHC-type
PROSITE profile	PS51294	19.093	112	168	IPR017930	Myb domain
SuperFamily	SSF46689	4.79E-19	113	169	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.8E-17	115	167	IPR006447	Myb domain, plants
Gene3D	G3DSA:1.10.10.60	1.9E-12	116	162	IPR009057	Homeodomain-like
SMART	SM00717	5.7E-12	116	166	IPR001005	SANT/Myb domain
CDD	cd00167	1.61E-11	119	164	No hit	No description
Pfam	PF00249	1.1E-12	119	163	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence Send to blast
MARKCSSCGN NGHNSRTCTG HRSIQESGGG GGVRLFGVQL HVGGSPLKKC FSMECLSSSP 60 SPSPSYYAAA AVAASSSSPT VSSSSSLVSV EEAAGEKMAS GYLSDGLMAR AQERKKGVPW 120 TEEEHRKFLV GLEKLGKGDW RGISRHFVPT RTPTQVASHA QKYFLRQSSL TQKKRRSSLF 180 DVVEDAQRAP SSVNERLNLK DGTTNSVPEM GFPALSLGIS NRPKPEAMLP PPSLTLTPSC 240 SPAVSSSTPP RIHHPSSLKA TKPQVQLQAP DLELKISTAR QTDQTGSSPR TSFFGTIRVT

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription repressor that binds to 5'-TATCCA-3' elements in gene promoters. Contributes to the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Transcription repressor involved in a cold stress response pathway that confers cold tolerance. Suppresses the DREB1-dependent signaling pathway under prolonged cold stress. DREB1 responds quickly and transiently while MYBS3 responds slowly to cold stress. They may act sequentially and complementarily for adaptation to short- and long-term cold stress (PubMed:20130099). {ECO:0000269\|PubMed:12172034, ECO:0000269\|PubMed:20130099}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00565	DAP	Transfer from AT5G56840	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR01G05630.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by sucrose and gibberellic acid (GA) (PubMed:12172034). Induced by cold stress in roots and shoots. Induced by salt stress in shoots. Down-regulated by abscisic aci (ABA) in shoots (PubMed:20130099). {ECO:0000269\|PubMed:12172034, ECO:0000269\|PubMed:20130099}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK062109	0.0	AK062109.1 Oryza sativa Japonica Group cDNA clone:001-045-B07, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015625837.1	1e-138	transcription factor MYBS3-like
Swissprot	Q7XC57	8e-50	MYBS3_ORYSJ; Transcription factor MYBS3
TrEMBL	A0A0D9UXU1	0.0	A0A0D9UXU1_9ORYZ; Uncharacterized protein
STRING	LPERR01G05630.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4231	38	73

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56840.1	3e-51	MYB_related family protein

Publications ? help Back to Top
Rice Chromosome 10 Sequencing Consortium In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992] Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Su CF, et al. A novel MYBS3-dependent pathway confers cold tolerance in rice. Plant Physiol., 2010. 153(1): p. 145-58 [PMID:20130099]