PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G05700.2
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family MYB_related
Protein Properties Length: 715aa    MW: 80658.4 Da    PI: 9.5727
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G05700.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.24.4e-094679338
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlk 38
                      W+++E  ++++a +++G++ Wk++++ +g g+++ 
  LPERR01G05700.2 46 QWSKDELMRFYEAYRRHGKK-WKKVSASVG-GKSAD 79
                     6*******************.*********.*9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.9714299IPR017884SANT domain
SuperFamilySSF466891.64E-84289IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.5E-44681IPR009057Homeodomain-like
PfamPF002498.9E-84681IPR001005SANT/Myb domain
CDDcd001672.56E-44781No hitNo description
PfamPF065841.5E-21449515IPR033471DIRP domain
SMARTSM011359.9E-17449536IPR033471DIRP domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 715 aa     Download sequence    Send to blast
MGPAKGSRTI TKITIKGFDD RQHDEDPTSS SKVKLKKRKM SDLGPQWSKD ELMRFYEAYR  60
RHGKKWKKVS ASVGGKSADA VEALYSVHRT FLSLPEREGT AMGFVALVTG HHNVSDESKS  120
LKESDQMVSA SGKRRKHGQA TGQKEKELPH AHRSYLERRT YGLSSFKKRY YGDLVKNIPR  180
HPSARRTPRV PVIFPADMNV ADAARPEIEN AINYTKKASE VINNELGRSP DGSSGISESA  240
QVVQGQIFLE TKGTGDSQIL GGLKKRRIEQ NEMLVLDVLE SLVTVPNKIS GPKINIPSGA  300
VEKSDSTFPH RREEGPSKRS KQGKQVGECS ASKTRTKRRK KLIAEAVPNH LNLPVEHQVD  360
TTECALNSDP ERGTLDLPES ILNISTEVPD LPSQMKPEIY MSRRTKRKSK IQCRSNYDIC  420
NGADHLQARR LQHCLSSESL RIWCTYEWFY SAVDYPWFMD NEFVNYLNFA KLSHLSRLTR  480
SEWSTIRSSL GKPRRFSDHF LVAEKEKLED YREKVIVRHP RTRELCNGKV VMMEHGGYKV  540
QFDRPDLGVD KVKDTDCMPV NWSDNLPNDH KKKSFLSNNS HNGGVEQISK LSSKENWNHI  600
SGEPESSKIL YIPSDEQAEI AVDTEKLSNK SSSGNCGPLQ PLQPVDEIHL SDSEYRQQPA  660
KIAGVLERAC LMLRPSCSEN LPIYNDIENC ISVIKNQILA LVPTASSSAR LPMYM
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR01G05700.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0644720.0AK064472.1 Oryza sativa Japonica Group cDNA clone:002-110-H06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015699150.10.0PREDICTED: protein ALWAYS EARLY 3-like isoform X2
TrEMBLA0A0D9UXU90.0A0A0D9UXU9_9ORYZ; Uncharacterized protein
STRINGLPERR01G05700.30.0(Leersia perrieri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21430.26e-48DNA binding