PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G05700.3
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family MYB_related
Protein Properties Length: 894aa    MW: 99697.8 Da    PI: 10.0539
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G05700.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.85.9e-094679338
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlk 38
                      W+++E  ++++a +++G++ Wk++++ +g g+++ 
  LPERR01G05700.3 46 QWSKDELMRFYEAYRRHGKK-WKKVSASVG-GKSAD 79
                     6*******************.*********.*9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.9714299IPR017884SANT domain
SuperFamilySSF466892.17E-84289IPR009057Homeodomain-like
PfamPF002491.2E-74681IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.6E-44681IPR009057Homeodomain-like
CDDcd001671.78E-44781No hitNo description
SMARTSM011359.9E-17485572IPR033471DIRP domain
PfamPF065842.0E-21485551IPR033471DIRP domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 894 aa     Download sequence    Send to blast
MGPAKGSRTI TKITIKGFDD RQHDEDPTSS SKVKLKKRKM SDLGPQWSKD ELMRFYEAYR  60
RHGKKWKKVS ASVGGKSADA VEALYSVHRT FLSLPEREGT AMGFVALVTG HHNVSDESKS  120
LKESDQMVSA SGKRRKHGQA TGQKEKELPH AHRSYLERRT YGLSSFKKRY YGDLVKNIPR  180
HPSARRTPRV PVIFPADMNV ADAARPEIEN AINYTKKASE VINNELGRSP DGSSGISESA  240
QVVQGQIFLE TKGTGDSQIL GGLKKRRIEQ SMDQYQTIKD EHDTTVAAKE GKDLTDYQNL  300
TGFFSPDEML VLDVLESLVT VPNKISGPKI NIPSGAVEKS DSTFPHRREE GPSKRSKQGK  360
QVGECSASKT RTKRRKKLIA EAVPNHLNLP VEHQVDTTEC ALNSDPERGT LDLPESILNI  420
STEVPDLPSQ MKPEIYMSRR TKRKSKIQCR SNYDICNGAD HLQARRLQHC LSSESLRIWC  480
TYEWFYSAVD YPWFMDNEFV NYLNFAKLSH LSRLTRSEWS TIRSSLGKPR RFSDHFLVAE  540
KEKLEDYREK VIVRHPRTRE LCNGKVVMME HGGYKVQFDR PDLGVDKVKD TDCMPVNWSD  600
NLPNDHKKKS FLSNNSHNGG VEQISKLSSK ENWNHISGEP ESSKILYIPS DEQAEIAVDT  660
EKLSNKSSSG NCGPLQPLQP VDEIHLSDSE YRQQPAKIAG VLERACLMLR PSCSENLPIY  720
NDIENCISVI KNQILALVPT ASSSARLPML PADEDVRTEK KTPRSGRPGR GAAASSTSKR  780
NRLASPPAAA AAVASQVTAP SAATGSTEVT PRPHLPRIIC EIPPPATGHF AFTAATAPAH  840
AAGNPSSLVG PTLTPHRRRG ALLSTMSPSS TSPRRRRRRR RRQVLSFSLS RFGR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1856878RRRGALLSTMSPSSTSPRRRRRR
2873881RRRRRRRRR
3874881RRRRRRRR
4875881RRRRRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR01G05700.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0644720.0AK064472.1 Oryza sativa Japonica Group cDNA clone:002-110-H06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619153.10.0protein ALWAYS EARLY 2 isoform X2
TrEMBLA0A0D9UXV00.0A0A0D9UXV0_9ORYZ; Uncharacterized protein
STRINGLPERR01G05700.30.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP86963038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21430.22e-47DNA binding