PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G05760.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family C2H2
Protein Properties Length: 488aa    MW: 50703.1 Da    PI: 8.7862
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G05760.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.42.8e-067496123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     y+C++Cgk F r  nL+ H r H
  LPERR01G05760.1 74 YVCEICGKGFQRDQNLQLHRRGH 96
                     9********************88 PP
2zf-C2H211.30.0011151173123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      +kC +C+k +  +s+ k H +++
  LPERR01G05760.1 151 WKCDKCSKKYAVQSDWKAHSKVC 173
                      58*****************9877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.59E-87396No hitNo description
PROSITE profilePS5015711.8017496IPR007087Zinc finger, C2H2
SMARTSM003550.00697496IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.3E-67496IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002807696IPR007087Zinc finger, C2H2
SMARTSM0035541116146IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.0E-4139171IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.59E-8146171No hitNo description
SMARTSM00355150151171IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MMMKDLAEIQ QQQLMLAADE NMSNLTSASG DQASVSSHPA PPPAKKKRSL PGNPDPEAEV  60
IALSPKTLMA TNRYVCEICG KGFQRDQNLQ LHRRGHNLPW KLKQRNPKEV VRKKVYVCPE  120
PGCVHHEPAR ALGDLTGIKK HFSRKHGEKK WKCDKCSKKY AVQSDWKAHS KVCGTREYRC  180
DCGTLFSRRD SFITHRAFCD ALAEESARAV TAAAQQQQVG ILFAGGGGGG GGLQMPAVVD  240
QVAAMGMMQE ICLKREQQQQ FVPSWMEMMG GVGGGAAMYG AAPAARMEQE SFMGSSTPSE  300
SGGGGGGGGA QVGVMSFGGF SSSSSAAAPA PPLAGVGGAA AAHMSATALL QKAAQMGATL  360
SRPSNQGQMA PATTATAAAP TSNATSTSVV AGGGAGGYGL AFDASRFVGA DDRSATRSDR  420
DTGNGGGGGA VAGAGNDGMT RDFLGLRAFS HGDIMSMAGF DPCLSTSASP AAAYEQHHHH  480
SSNKPWHG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C5e-34147208364Zinc finger protein JACKDAW
5b3h_F5e-34147208364Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1100113KLKQRNPKEVVRKK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00206DAPTransfer from AT1G55110Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR01G05760.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622491.10.0protein indeterminate-domain 7
TrEMBLA0A0D9UXV70.0A0A0D9UXV7_9ORYZ; Uncharacterized protein
STRINGLPERR01G05760.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55110.14e-98indeterminate(ID)-domain 7