PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR01G06630.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

MYB_related

Protein Properties

Length: 208aa MW: 23017.8 Da PI: 8.3832

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR01G06630.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	44.3	4.2e-14	36	86	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqkyl 48 +WT+eEd l ++ k G ++W+++a++m+ +R++ +c++rw+ +l LPERR01G06630.1 36 PWTPEEDACLERLAKANGFRHWRRVASEMPmppwqRRRSARHCRDRWREHL 86 8***********************************************886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	16.874	29	90	IPR017930	Myb domain
SMART	SM00717	3.6E-10	33	88	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.9E-16	36	103	IPR009057	Homeodomain-like
CDD	cd00167	9.19E-11	36	86	No hit	No description
SuperFamily	SSF46689	4.81E-15	36	104	IPR009057	Homeodomain-like
Pfam	PF00249	1.1E-12	36	86	IPR001005	SANT/Myb domain
PROSITE profile	PS50090	5.308	87	140	IPR017877	Myb-like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 208 aa Download sequence Send to blast
METDSSDCLS TVEEAAPATP STSSGRIVVR IRLQPPWTPE EDACLERLAK ANGFRHWRRV 60 ASEMPMPPWQ RRRSARHCRD RWREHLARDV YHRPFTPDDD AELAFLRLRG AGGGDSWKDV 120 SRAAYCRTSR VMRRRWRELR KSDAFLGALY GAQPPADQEA GMDAAMDDAP THSDVLTSSV 180 ASYSAGCGAV ASGGNVTAVA PRFACLAV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR01G06630.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006645625.1	2e-62	PREDICTED: transcription factor MYB44-like
TrEMBL	A0A0D9UY63	1e-149	A0A0D9UY63_9ORYZ; Uncharacterized protein
STRING	LPERR01G06630.1	1e-149	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8360	13	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37260.1	1e-13	myb domain protein 73