PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G06720.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bZIP
Protein Properties Length: 312aa    MW: 33924.4 Da    PI: 6.5091
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G06720.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_134.44.7e-11186230549
                      CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkel 49 
                      kr +r   NR +A+rsR RK+++i eLe+ v +L++e +aL  ++
  LPERR01G06720.1 186 KRVKRILANRQSAQRSRVRKLQYISELERSVTSLQTEVSALSPRV 230
                      8999*********************************99998766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003383.6E-14182246IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.76184240IPR004827Basic-leucine zipper domain
PfamPF001705.4E-10186236IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1704.4E-14186240No hitNo description
SuperFamilySSF579591.69E-11186240No hitNo description
CDDcd147035.93E-24187237No hitNo description
PROSITE patternPS000360189204IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MAQLPPKIPT MATAWPEFGG GHHHHHHHHA HGHHHHQRSP SMGAFLAAPL PPFPLPPPAP  60
ANGGAQPQPS WVDEFLDFSA AKRGAHRRSV SDSVAFLEAV TDDNAGGVDG SHDFDRLDDD  120
QLMSMFSDDL QPPPPPQQQA ASSPSDHNSM NDEKQDKGET EEAQSECDGD GAAPGQPASP  180
ATVDPKRVKR ILANRQSAQR SRVRKLQYIS ELERSVTSLQ TEVSALSPRV AFLDHQRSLL  240
TLGNSHLKQR IAALAQDKIF KDAHQEALKK EIERLRQIYH QQSLKNGESQ PAGDGNDKAA  300
DLIATEGTAA PS
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR01G06720.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by dehydration and salt stress. {ECO:0000269|PubMed:18065552}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1009440.0AK100944.1 Oryza sativa Japonica Group cDNA clone:J023138F18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015694867.11e-151PREDICTED: basic leucine zipper 2-like
SwissprotQ5QNI51e-121BZP02_ORYSJ; Basic leucine zipper 2
TrEMBLA0A0D9UY760.0A0A0D9UY76_9ORYZ; Uncharacterized protein
STRINGLPERR01G06720.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132238125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58120.16e-91bZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]