PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G07340.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family ERF
Protein Properties Length: 357aa    MW: 38309.4 Da    PI: 4.2767
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G07340.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2621.3e-19130181156
              AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                      ++++GVr+++ +g+++AeIrd +     r  r++lg+f+taeeAak ++ a+ +l+g+
  LPERR01G07340.1 130 PRFRGVRRRP-WGKYAAEIRDpW-----RrVRVWLGTFDTAEEAAKVYDSAAIQLRGA 181
                      689*******.**********88.....55*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.01E-29130187No hitNo description
PfamPF008474.2E-12130180IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-21131189IPR016177DNA-binding domain
SMARTSM003809.1E-31131193IPR001471AP2/ERF domain
PROSITE profilePS5103222.958131188IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-28131189IPR001471AP2/ERF domain
PRINTSPR003674.6E-10132143IPR001471AP2/ERF domain
PRINTSPR003674.6E-10154170IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048364Biological Processroot development
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MEAEEAFVAV KRTEHVEVTS LIVDSSAAKG NKGKVVAAAA AAGVMPARVR VFCDDVDATD  60
SSSDEEDDEE EVTVRRRVKR YVQEIRLQRA TALPVKAEVL PPVVSTAKAA ATAVVLSGRK  120
RKAEGGGGEP RFRGVRRRPW GKYAAEIRDP WRRVRVWLGT FDTAEEAAKV YDSAAIQLRG  180
ADATTNFNRS GDLLADVPPE VAKRVPQPPE AEKNASPATS YDSGEESHAA AAASPTSVLR  240
SFPPSAVDKK PSPSPPLVVR ESDESSGGFF GCSFSDDGGY AGELPPLYSD FDLLADFPEP  300
PLDFLSNLPD EPFSLAPFSD DDDGDDGDAP SPAAEQQVDD FFQDITDLFQ IDPLPVV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-181311871471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00027PBMTransfer from AT4G23750Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR01G07340.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1010541e-107AK101054.1 Oryza sativa Japonica Group cDNA clone:J033015K21, full insert sequence.
GenBankAK1065171e-107AK106517.1 Oryza sativa Japonica Group cDNA clone:002-107-B02, full insert sequence.
GenBankAP0018001e-107AP001800.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0443E05.
GenBankAP0028351e-107AP002835.1 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0417G05.
GenBankAP0149571e-107AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629650.11e-156ethylene-responsive transcription factor CRF2
TrEMBLA0A0D9UYG40.0A0A0D9UYG4_9ORYZ; Uncharacterized protein
STRINGLPERR01G07340.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16903697
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23750.29e-32cytokinin response factor 2