PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G08470.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family LBD
Protein Properties Length: 229aa    MW: 24323.4 Da    PI: 9.7302
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G08470.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601025.2e-326105199
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                      aCa+Ck++rrkC+++C la yfpa+++++f+++h +FG++n++kl+ka  +e  r++a+++l++eA++r rdP +G+++ ++ l+++ + l+ae
  LPERR01G08470.1   6 ACAVCKHQRRKCEPNCELAAYFPANRMNDFRALHLVFGVANLTKLIKANATEAaRRRAAETLTWEARWRERDPSEGCYREVSCLRRDNALLRAE 99 
                      7**********************************************9977766***************************************9 PP

           DUF260  94 lallke 99 
                       a+l++
  LPERR01G08470.1 100 NAALRR 105
                      998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089120.3075107IPR004883Lateral organ boundaries, LOB
PfamPF031958.6E-296103IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MTGGGACAVC KHQRRKCEPN CELAAYFPAN RMNDFRALHL VFGVANLTKL IKANATEAAR  60
RRAAETLTWE ARWRERDPSE GCYREVSCLR RDNALLRAEN AALRRHADQC SFCGAARHAS  120
SATTLQHQQQ LLHVTGRPPP PHNAGNGSIG GFAGGGYNGV MSSVRAPPQH AQALPATAAA  180
QTLTGGFVAQ DERYRVVSVC PAAAAANGGA MARSGATVRG QGGDCREKS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-164999103LOB family transfactor Ramosa2.1
5ly0_B3e-164999103LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR01G08470.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0032011e-133AP003201.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1066G12.
GenBankAP0149571e-133AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126091e-133CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644107.12e-83protein ASYMMETRIC LEAVES 2
TrEMBLA0A0D9UYW71e-166A0A0D9UYW7_9ORYZ; Uncharacterized protein
STRINGLPERR01G08470.11e-167(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130442833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06280.13e-15LOB domain-containing protein 2