PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G08830.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family Nin-like
Protein Properties Length: 310aa    MW: 33034.1 Da    PI: 8.466
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G08830.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK73.52.6e-234693451
           RWP-RK  4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiks 51
                     ++s e++sk Fslpi++AA+ Lgvc++vLKriCR +GI RWP+Rki s
  LPERR01G08830.1 46 SLSYEEISKLFSLPIAEAASILGVCTSVLKRICRSHGIVRWPYRKIVS 93
                     6899*****************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.05227114IPR003035RWP-RK domain
PfamPF020423.4E-214792IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MASTAAQRQQ PAALQPQPEQ PAAAAAVPAP VQAQAQAQQQ KPTRVSLSYE EISKLFSLPI  60
AEAASILGVC TSVLKRICRS HGIVRWPYRK IVSGKSGDDT KNAEREKAKE LLEISKNAKQ  120
KALSASGLST VSPGAFQGGA KTQQGSSKAG QVSPLGKQNS LSGSAILAHG TQIKGIPTYM  180
DDFKYGFPLS GLSLETMKWW GTDSHTETTP AKDENGEAPE SANDTSKGMT DDELDWGADE  240
AEGEADGAIT TEPSAQLCSL RRKAVDDGRK LLTGKSCGDQ ELCRLNKRQK IALAQVFGAS  300
LPEQLRRKLE
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR01G08830.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0589840.0AK058984.1 Oryza sativa Japonica Group cDNA clone:001-020-E04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015625714.11e-173uncharacterized protein LOC4326758
TrEMBLA0A0D9UZ120.0A0A0D9UZ12_9ORYZ; Uncharacterized protein
STRINGLPERR01G08830.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67053242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74480.14e-10RWP-RK domain-containing protein