PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G09410.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family C3H
Protein Properties Length: 913aa    MW: 96451.2 Da    PI: 8.0714
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G09410.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH331e-105985127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                     +++e C +++rtG C +GdrC+++H++
  LPERR01G09410.1 59 PGEEDCVYYLRTGACGFGDRCRYNHPR 85
                     5899*********************96 PP
2zf-CCCH36.86.6e-12111135327
                      S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                      +++C ++++tGtCk+G +Ck++H++
  LPERR01G09410.1 111 QPICEYYMKTGTCKFGTNCKYHHPK 135
                      799********************96 PP
3zf-CCCH39.21.2e-12156180327
                      S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                      +++C+++++tG+Ck+G++CkF+H++
  LPERR01G09410.1 156 EKECSYYMKTGQCKFGSTCKFHHPE 180
                      689********************96 PP
4zf-CCCH37.44.4e-12308334127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      +++++C++++rtG Ck+G++Ck++H++
  LPERR01G09410.1 308 PGQPECQYYMRTGDCKFGATCKYHHPR 334
                      5789*********************96 PP
5zf-CCCH30.94.6e-10357380427
                      ---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                       +C ++a++G+C+yG  Ck+ H++
  LPERR01G09410.1 357 QPCAYYAQNGYCRYGVACKYDHPM 380
                      69********************95 PP
6zf-CCCH314.2e-10496522127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      ++++ C +++rtG C yG++C+++H++
  LPERR01G09410.1 496 PGEADCVYYLRTGACGYGENCRYNHPR 522
                      57899********************96 PP
7zf-CCCH35.22e-11546572127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      ++++ C +++++GtCk+G++Ck+ H++
  LPERR01G09410.1 546 PGQPACEYYMKNGTCKFGSNCKYDHPR 572
                      57899********************96 PP
8zf-CCCH33.38.2e-11591616227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      +++ C+++ +tG+Ck+G++CkF+H++
  LPERR01G09410.1 591 GEKDCSYYIKTGHCKFGSTCKFHHPE 616
                      7889********************96 PP
9zf-CCCH36.11.1e-11745771127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      ++++ C+++++tG Ck+G+ Ck++H++
  LPERR01G09410.1 745 PGQPDCQYYLKTGSCKFGSACKYHHPQ 771
                      5789*********************97 PP
10zf-CCCH253.2e-08795817527
                      --SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                      +C ++ + G+Ck+G++CkF H++
  LPERR01G09410.1 795 PCAYYTQHGFCKFGPTCKFDHPM 817
                      8********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.545886IPR000571Zinc finger, CCCH-type
SMARTSM003569.0E-75885IPR000571Zinc finger, CCCH-type
PfamPF006428.8E-86085IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.94E-66186IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-46485IPR000571Zinc finger, CCCH-type
SMARTSM003562.2E-6108135IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.788108136IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.23E-6111137IPR000571Zinc finger, CCCH-type
PfamPF006423.1E-9111135IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-5113137IPR000571Zinc finger, CCCH-type
SMARTSM003564.5E-6153180IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.183153181IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.68E-6154180IPR000571Zinc finger, CCCH-type
PfamPF006423.7E-10156180IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-4159179IPR000571Zinc finger, CCCH-type
SMARTSM003564.1E-6307334IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.319307335IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-9309334IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-5312335IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-4313334IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-6353380IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.892353381IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-5354383IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-4357378IPR000571Zinc finger, CCCH-type
PfamPF006427.9E-8357380IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-6495522IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.211495523IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-7497522IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.81E-6499523IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-4501522IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.314545573IPR000571Zinc finger, CCCH-type
SMARTSM003565.7E-7545572IPR000571Zinc finger, CCCH-type
PfamPF006424.8E-9547572IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.63E-6549573IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-4551573IPR000571Zinc finger, CCCH-type
SMARTSM003566.7E-5589616IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.756589617IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-7591616IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-5592615IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.7E-4595615IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.117744772IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-6744771IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-9746771IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.71E-5749772IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.9E-4750772IPR000571Zinc finger, CCCH-type
SMARTSM003568.6E-5790817IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.432790818IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-5792820IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.5E-4795815IPR000571Zinc finger, CCCH-type
PfamPF006426.9E-6795817IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 913 aa     Download sequence    Send to blast
MEPHAAATAA AGGGGGGDGE GGGGGSPDTG LEGPMWRMGL GGGGGGGEGD AATRLPERPG  60
EEDCVYYLRT GACGFGDRCR YNHPRDRGGG TEFGGGTKNA AALDYPERAG QPICEYYMKT  120
GTCKFGTNCK YHHPKQDGSV LPVMLNNSGF PIRLGEKECS YYMKTGQCKF GSTCKFHHPE  180
FGGVQMTPGI YPSLQSPSIP SPHPYASLAN WQMGRPPVVP GSYMSGSYTP MVLPSGMIPL  240
QGWSPYPASV NPVVSGGAQQ NVQAGPVYGM GHHGSSSTIA YGGPYVPYAS STGQSSNNQQ  300
EQGFPERPGQ PECQYYMRTG DCKFGATCKY HHPRDLSAPK SSYMVNPLCL PLRPGAQPCA  360
YYAQNGYCRY GVACKYDHPM GTLGYSPSAL LLPDMPIAPY PIGFSIATLA PSSSSPDLRP  420
EYISTKDQSV NQVTSPVAAS EPAGSILPKG VFPTDTMMRA QTNTTGGSSS PGAESMWRLG  480
LGGGGEGGAA RLPERPGEAD CVYYLRTGAC GYGENCRYNH PRDRAASAAL NGGGKSTHLA  540
EYPERPGQPA CEYYMKNGTC KFGSNCKYDH PRESSVQPVI LNASGYPLRP GEKDCSYYIK  600
TGHCKFGSTC KFHHPEIGGV SETPNMYPPV QPPPMSSSHP YPQLAGWQMG RPPVLPGSYL  660
PGSYPPMMLP STVLPMQGWN PYISHVNQVA SAGGHQTIQS GPFYGLSHQG PSSAVTYGSQ  720
YAPSLSSSAM PSSSSNQEPA FPARPGQPDC QYYLKTGSCK FGSACKYHHP QHLNTPKSNC  780
ILSPLGLPLR PGSHPCAYYT QHGFCKFGPT CKFDHPMGTL SYSPSASSIT DVPVAPYPVG  840
FAVAPVAPSS SSSDLRPEYV LTKEFSANQS VSPGTICGPA GAMLKAYAPH MLIRPQTSAS  900
GGIVTTHGGP NKT
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR01G09410.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1116330.0AK111633.1 Oryza sativa Japonica Group cDNA clone:J013116H24, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003566542.20.0uncharacterized protein LOC100827764
SwissprotQ5NAW20.0C3H6_ORYSJ; Zinc finger CCCH domain-containing protein 6
TrEMBLA0A0D9UZ820.0A0A0D9UZ82_9ORYZ; Uncharacterized protein
STRINGLPERR01G09410.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27613889
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.31e-121C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Friedrichs G,Fikri M,Guo Y,Temps F
    Time-resolved cavity ringdown measurements and kinetic modeling of the pressure dependences of the recombination reactions of SiH2 with the alkenes C2H4, C3H6, and t-C4H8.
    J Phys Chem A, 2008. 112(25): p. 5636-46
    [PMID:18512897]
  3. Ning H,Gong C,Li Z,Li X
    Pressure-dependent kinetics of initial reactions in iso-octane pyrolysis.
    J Phys Chem A, 2015. 119(18): p. 4093-107
    [PMID:25868004]