PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G10950.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bHLH
Protein Properties Length: 715aa    MW: 75817.7 Da    PI: 8.0872
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G10950.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.29.4e-16498544455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       hn  ErrRRdriN+++  L+el+P++      K +Ka++L +A+eY+k Lq
  LPERR01G10950.1 498 VHNLSERRRRDRINEKMRALQELIPNC-----NKIDKASMLDEAIEYLKTLQ 544
                      5*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.56E-17491548No hitNo description
SuperFamilySSF474592.22E-20492553IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.981494543IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.7E-20498552IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.1E-13498544IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-17500549IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0031539Biological Processpositive regulation of anthocyanin metabolic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 715 aa     Download sequence    Send to blast
MRRLSLLIYL LVHSVSPRSL LGPPTQPRRL SLLFSLIPHA DQQFSAARDF SLPRFTFYFL  60
SLLFSFGFGF HERELTLTSH PAQLRKHGLD CIRLVGVLQL QTRSPSLLDL FSLLGLQAQM  120
SDGNDFAELL WENGQAVVHG RRKHAPPAFP PFGFGGGGGG GSSSNRAQER HPGGGDAFAK  180
AGNFVALGMG AAVHDFTPTF GGAAHDNGDD DAVPWIHYPI IDDDDGAAAP ALAANDYGSD  240
FFSELQAAAA AAAAAAAPPN DLGSLPTNNR NAPIATTCSR EPPSKETHGG GLSVPTTQAS  300
PQLAAGAAKL PRPSGSGSGD GVMNFSLFSR PAVLARATLQ SAQRTQGTDK ASNVTAASNR  360
VESTVVQTAS GARSGPAFAA DQRAWPPQPK EMPFASTAAA APVATAVNLQ HEIGSDRAGR  420
NIGVHKNEGR KAPEATVATS SVCSGNGAGN DELWRQHKRK RQAQAECSAS QEDDIDDEPS  480
ALRRSATRST KRSRTAEVHN LSERRRRDRI NEKMRALQEL IPNCNKIDKA SMLDEAIEYL  540
KTLQLQVQMM SMGTGLCIPP MLLPAAMQHL QIPPMAHFPH LGMGLGYGMG VFDMNNTGTL  600
PMPHMPGAHF PCPMIPGASP QGLGIPGTNT LPMFGVPGQA VPSSAPSIPP FPSLAGLHVR  660
PNGVPQVSGA MANMVQDQQQ GIGNQQQQCL NKEAIQGANT NDPQMQIIMQ VLINK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1502507ERRRRD
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may act as negative regulator of phyB-dependent light signal transduction. {ECO:0000269|PubMed:17485859}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00081ChIP-seqTransfer from AT1G09530Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR01G10950.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by light in dark-grown etiolated seedlings. {ECO:0000269|PubMed:17485859}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1022520.0AK102252.1 Oryza sativa Japonica Group cDNA clone:J033088H11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619034.10.0transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15-like isoform X2
SwissprotQ0JNI90.0PIL15_ORYSJ; Transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15
TrEMBLA0A0D9UZU30.0A0A0D9UZU3_9ORYZ; Uncharacterized protein
STRINGLPERR01G10950.20.0(Leersia perrieri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.23e-34phytochrome interacting factor 3
Publications ? help Back to Top
  1. Nakamura Y,Kato T,Yamashino T,Murakami M,Mizuno T
    Characterization of a set of phytochrome-interacting factor-like bHLH proteins in Oryza sativa.
    Biosci. Biotechnol. Biochem., 2007. 71(5): p. 1183-91
    [PMID:17485859]
  2. Zhao XL,Shi ZY,Peng LT,Shen GZ,Zhang JL
    An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15.
    N Biotechnol, 2011. 28(6): p. 788-97
    [PMID:21549224]