PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G11040.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family M-type_MADS
Protein Properties Length: 230aa    MW: 25702.6 Da    PI: 10.4244
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G11040.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF467e-15949141
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41
                     kri  +s r vt+ kRr g++KKA EL  LC++ v+v+++ 
  LPERR01G11040.1  9 KRIAKDSTRRVTLKKRRSGLIKKAGELASLCGIGVSVVVYE 49
                     79999**********************************94 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006617.843150IPR002100Transcription factor, MADS-box
SMARTSM004323.4E-15160IPR002100Transcription factor, MADS-box
CDDcd002662.18E-23285No hitNo description
PRINTSPR004042.6E-8323IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.53E-20395IPR002100Transcription factor, MADS-box
PfamPF003195.1E-141050IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-82338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043078Cellular Componentpolar nucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MARNRIILKR IAKDSTRRVT LKKRRSGLIK KAGELASLCG IGVSVVVYEE GEVQPEVWPS  60
APEVRTILSR FTASPDLDRF KRVRNQEDYL QQRIAKIRET MSKEDDENRK RDATVMLYEA  120
ATGKRPLADL NVGELTNLVP VIDERIKNLK QRIERLGGEA PMDPSPFQPL LPYVNGMGME  180
RNKRMKVGTE NNLLFSTMPT RGNVGTSAYI SFGSSGSVSV GTSTRGCDMV
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00553DAPTransfer from AT5G48670Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR01G11040.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006644077.11e-104PREDICTED: agamous-like MADS-box protein AGL80
TrEMBLA0A0D9UZV71e-167A0A0D9UZV7_9ORYZ; Uncharacterized protein
STRINGLPERR01G11040.11e-168(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36336202
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.16e-24AGAMOUS-like 80