PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G11050.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family WRKY
Protein Properties Length: 572aa    MW: 60209.8 Da    PI: 7.6031
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G11050.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.53.6e-30293351259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed++v+++tYeg+Hnh+
  LPERR01G11050.1 293 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAnGCPVRKQVQRCAEDKTVLITTYEGNHNHH 351
                      7***************************999***************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.4E-33277353IPR003657WRKY domain
SuperFamilySSF1182902.48E-27285353IPR003657WRKY domain
PROSITE profilePS5081129.471287353IPR003657WRKY domain
SMARTSM007749.0E-36292352IPR003657WRKY domain
PfamPF031063.0E-26294351IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 572 aa     Download sequence    Send to blast
MELRPPPKQQ HHHHRRRGGA GEEEEEDQAA MEHGRLSLRS GGGAFWRHDD ENRRRGEIKE  60
VDFFLSSRDS ASRRHDDSGG GGRDDVNIGL DLLTTMNGGA AAAAVAGEEE TAKNHRKEAA  120
VTTAVDAELR RVVEENRRLR DMLDELTRSY NALYHQFLQV TQQQSHHNHR HPDLTTIMNN  180
NRSSLTQTHR TTAVLNPTTT TTQQFLEPRA SSTAAAVAAS IDEGEAAGGG DASPNSSLMS  240
NAGGGNKRRI AQDETAAPVP APARENGEQA AAELPCRKPR VSVRARSEAP MISDGCQWRK  300
YGQKMAKGNP CPRAYYRCTM ANGCPVRKQV QRCAEDKTVL ITTYEGNHNH HLPPAATTMA  360
NTTSAAAAML LSGPAPSRDA TPFAHPHSYP AAAMSFHQSF PYASTMATLS ASAPFPTITL  420
DLTQSPSGAA GLMHALHRAA APPPAIHHPA MPFAVPPQLA AMYLPQQRPA AARQMPASVM  480
ETVTAALAAD PNFTTALAAA ISSVVAGGGA QAHHQAMSAT TPRAGAGAIA GDGNGDGGNA  540
DAAVGATAAA EAPAASGSPP RVATQSCTTS TT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-21280355276WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR01G11050.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0024804e-50AP002480.1 Oryza sativa Japonica Group genomic DNA, chromosome 1, clone:P0469E05.
GenBankAP0149574e-50AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126094e-50CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880603.10.0probable WRKY transcription factor 47 isoform X1
TrEMBLA0A0D9UZV80.0A0A0D9UZV8_9ORYZ; Uncharacterized protein
STRINGLPERR01G11050.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43583260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04450.12e-60WRKY family protein