PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR01G11190.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

SBP

Protein Properties

Length: 830aa MW: 92597.8 Da PI: 6.503

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR01G11190.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	118.6	3e-37	104	181	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv+gC dl++ ++y++rhkvCe+h+k+ vvl++++e+rfCqqCsrfh l+efDe+k+sCr rLa+hn+rrrk qa LPERR01G11190.1 104 CCQVDGCLIDLNNGRDYYKRHKVCEAHTKSGVVLIKNVEHRFCQQCSRFHFLQEFDEGKKSCRLRLAQHNRRRRKVQA 181 6**************************************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	1.4E-28	99	166	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	29.983	102	179	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	2.22E-34	103	182	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.6E-28	105	178	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF48403	1.38E-6	562	711	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	5.1E-5	563	710	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	7.21E-5	644	709	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 830 aa Download sequence Send to blast
MSGLKKKGLE WDLNDWRWDA NLFLATPSNA SPSRCSNREL GRAEGEIDFG VVDKRRRISP 60 EDDHEGCSNA VTTNGDDDWI DVQRGKSSED EMLRQGACSS SGPCCQVDGC LIDLNNGRDY 120 YKRHKVCEAH TKSGVVLIKN VEHRFCQQCS RFHFLQEFDE GKKSCRLRLA QHNRRRRKVQ 180 AQAASGSSEQ TNGPNYLVNL VKNLAAIAGT QTYQDMLKNA TAAISSHTGN CVANGISLQD 240 QRAPIPVGTD SSAEELTAER RVQSFDLNDT YVEGDENRTD KIVFKLFGKE PKDFPSDLRA 300 QVLNWLSNCP SDIESYIRPG CIILTIYLRL PNWMWDKLAA DPAHWIEKLI SLSTDALWRT 360 GWMYTRVRDH LTLSCNGSLV LASPWQPIIG RKHQILLVTP IAVACSSTAN FSVKGFNIVQ 420 PTTKLLCIFG GKYLIQEATE MLLDDTTMQQ GPQCLTFSCC FPSTSGRGFI EVEDYDQSSL 480 SFPFVVAEED VCSEIRTLEH ELNLVSFDDT LVERNDLLAS RDQALNFLQE FGWFLQRSHM 540 QATSETPKDC TEIFPAARFR WLLSFAVDRE FCAVVKKLLD TLFQGNVDLD VPSTVEFVLG 600 QDFVFTAVNK RSKPLIDFLL TYTTNSASMD RTDSAAPVQF LFTPDIAGPS DITPLHIAAT 660 NSDAAGILDA LIDDPQQLGI KAWKNARDAT GLTPEDYARK RGHKSYIQMV QNKIDSRLPK 720 AHVSVAITTD IAEKHANRPK LTDQTAFDVE KGQQSAKPPP LSCRRCLPEL AYHHHSNSFL 780 STRPAVLSLV AIAAVCVCLG LIMQGPPHIG GMRGPFRWNS LHSGPRHPES

Sequence ? help Back to Top

Protein Sequence Length: 830 aa Download sequence Send to blast

MSGLKKKGLE WDLNDWRWDA NLFLATPSNA SPSRCSNREL GRAEGEIDFG VVDKRRRISP  60
EDDHEGCSNA VTTNGDDDWI DVQRGKSSED EMLRQGACSS SGPCCQVDGC LIDLNNGRDY  120
YKRHKVCEAH TKSGVVLIKN VEHRFCQQCS RFHFLQEFDE GKKSCRLRLA QHNRRRRKVQ  180
AQAASGSSEQ TNGPNYLVNL VKNLAAIAGT QTYQDMLKNA TAAISSHTGN CVANGISLQD  240
QRAPIPVGTD SSAEELTAER RVQSFDLNDT YVEGDENRTD KIVFKLFGKE PKDFPSDLRA  300
QVLNWLSNCP SDIESYIRPG CIILTIYLRL PNWMWDKLAA DPAHWIEKLI SLSTDALWRT  360
GWMYTRVRDH LTLSCNGSLV LASPWQPIIG RKHQILLVTP IAVACSSTAN FSVKGFNIVQ  420
PTTKLLCIFG GKYLIQEATE MLLDDTTMQQ GPQCLTFSCC FPSTSGRGFI EVEDYDQSSL  480
SFPFVVAEED VCSEIRTLEH ELNLVSFDDT LVERNDLLAS RDQALNFLQE FGWFLQRSHM  540
QATSETPKDC TEIFPAARFR WLLSFAVDRE FCAVVKKLLD TLFQGNVDLD VPSTVEFVLG  600
QDFVFTAVNK RSKPLIDFLL TYTTNSASMD RTDSAAPVQF LFTPDIAGPS DITPLHIAAT  660
NSDAAGILDA LIDDPQQLGI KAWKNARDAT GLTPEDYARK RGHKSYIQMV QNKIDSRLPK  720
AHVSVAITTD IAEKHANRPK LTDQTAFDVE KGQQSAKPPP LSCRRCLPEL AYHHHSNSFL  780
STRPAVLSLV AIAAVCVCLG LIMQGPPHIG GMRGPFRWNS LHSGPRHPES

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	1e-24	96	178	1	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	53	57	KRRRI

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR01G11190.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK068471	0.0	AK068471.1 Oryza sativa Japonica Group cDNA clone:J013155F18, full insert sequence.
GenBank	AK072849	0.0	AK072849.1 Oryza sativa Japonica Group cDNA clone:J023142C13, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015614292.1	0.0	squamosa promoter-binding-like protein 1 isoform X3
Refseq	XP_015614297.1	0.0	squamosa promoter-binding-like protein 1 isoform X3
Refseq	XP_025880633.1	0.0	squamosa promoter-binding-like protein 1 isoform X3
Swissprot	Q9LGU7	0.0	SPL1_ORYSJ; Squamosa promoter-binding-like protein 1
TrEMBL	A0A0D9UZX4	0.0	A0A0D9UZX4_9ORYZ; Uncharacterized protein
STRING	LPERR01G11190.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1998	38	92

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47070.1	1e-174	squamosa promoter binding protein-like 1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Zhang H,Zhai J,Mo J,Li D,Song F Overexpression of rice sphingosine-1-phoshpate lyase gene OsSPL1 in transgenic tobacco reduces salt and oxidative stress tolerance. J Integr Plant Biol, 2012. 54(9): p. 652-62 [PMID:22889013] Zhang H, et al. Molecular characterization of rice sphingosine-1-phosphate lyase gene OsSPL1 and functional analysis of its role in disease resistance response. Plant Cell Rep., 2014. 33(10): p. 1745-56 [PMID:25113543]