PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G11670.2
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family TALE
Protein Properties Length: 144aa    MW: 16570.8 Da    PI: 9.4594
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G11670.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox31.43.2e-10781112255
                      SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
         Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                       +yp++e++ +LA+++gL+ +q+ +WF N+R ++
  LPERR01G11670.2  78 WPYPTEEDKLRLAARTGLDPKQINNWFINQRKRH 111
                      69*****************************985 PP
2ELK34.64.3e-123152122
              ELK  1 ELKhqLlrKYsgyLgsLkqEFs 22
                     ELK++Ll+KYsg+L+ L++EF+
  LPERR01G11670.2 31 ELKEMLLKKYSGCLSRLRSEFL 52
                     9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF037895.0E-93152IPR005539ELK domain
PROSITE profilePS5121310.4233151IPR005539ELK domain
SMARTSM011883.6E-63152IPR005539ELK domain
PROSITE profilePS5007112.84351114IPR001356Homeobox domain
SMARTSM003896.6E-1453118IPR001356Homeobox domain
SuperFamilySSF466895.56E-2053120IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.8E-2756115IPR009057Homeodomain-like
CDDcd000864.63E-1363115No hitNo description
PfamPF059201.9E-1771110IPR008422Homeobox KN domain
PROSITE patternPS00027089112IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010073Biological Processmeristem maintenance
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    Send to blast
MMGSSDEDQC SGETDMLDIG QEQSSRLADH ELKEMLLKKY SGCLSRLRSE FLKKRKKGKL  60
PKDARSALLE WWNTHYRWPY PTEEDKLRLA ARTGLDPKQI NNWFINQRKR HWKPSEGMRF  120
ALMEGVAGGS SGTTLYFDTG TIGP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14655LRSEFLKKRK
25256KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in shoot formation during early embryogenesis. {ECO:0000269|PubMed:10488233}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00670PBMTransfer from GRMZM2G087741Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR01G11670.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2413121e-164AK241312.1 Oryza sativa Japonica Group cDNA, clone: J065141L09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006644109.11e-103PREDICTED: homeobox protein knotted-1-like 1
SwissprotQ9FP291e-104KNOS1_ORYSJ; Homeobox protein knotted-1-like 1
TrEMBLA0A0D9V0341e-103A0A0D9V034_9ORYZ; Uncharacterized protein
TrEMBLA0A0D9V0351e-103A0A0D9V035_9ORYZ; Uncharacterized protein
STRINGLPERR01G11670.11e-103(Leersia perrieri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.18e-42KNOTTED-like from Arabidopsis thaliana
Publications ? help Back to Top
  1. Park SH, et al.
    A Ds-insertion mutant of OSH6 (Oryza sativa Homeobox 6) exhibits outgrowth of vestigial leaf-like structures, bracts, in rice.
    Planta, 2007. 227(1): p. 1-12
    [PMID:17624547]