PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G12910.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family M-type_MADS
Protein Properties Length: 382aa    MW: 40561.9 Da    PI: 4.3999
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G12910.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF25.71.5e-0825481740
                     HHHHHHHHHHHHHHHT-EEEEEEE CS
           SRF-TF 17 rngilKKAeELSvLCdaevaviif 40
                     r+ + KKA+ELSvLC++ va+i +
  LPERR01G12910.1 25 RKALKKKAKELSVLCGVPVALICA 48
                     67788*****************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554551.44E-12180IPR002100Transcription factor, MADS-box
SMARTSM004323.6E-4161IPR002100Transcription factor, MADS-box
PROSITE profilePS5006613.175146IPR002100Transcription factor, MADS-box
PfamPF003197.3E-72548IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MARGRTPIRL IADEKKRADK LELGRKALKK KAKELSVLCG VPVALICAAG GAAAAAEVWE  60
SEEGVIGRYL ALPEATRAKH TQRGYLEELL GKERANLAKE RQKGAFLPWD PALDAMTAEQ  120
AQELLASIDA ALATATARRD ALMSNGAAVN LNGDGGIVPP AAAGGAVQYY VGSSSSSGGD  180
DGAVSQMQMM MTSTAAGDGS IYYGNQHEIV PWDGNGIHNA AADETQNEYG FLCAQDHHYV  240
DTNWEAEAPA DGGNAQYGWH DQAMPMWCPC NEESYPCNPT TTTVPFNMAQ PIALSNGTNF  300
INAPQPNEFT GADFVDAPND FLSMGIGRSF VDVGDYSASG QSSADGYQLF GDGNCLDHQM  360
QYIGGDMGGV EHGDTQPRNW GR
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR01G12910.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D9V0I00.0A0A0D9V0I0_9ORYZ; Uncharacterized protein
STRINGLPERR01G12910.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP150691120
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40210.13e-07AGAMOUS-like 48