PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G15620.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bHLH
Protein Properties Length: 137aa    MW: 14362.7 Da    PI: 7.1338
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G15620.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.75.7e-053351854
                     HHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH 18 safeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                       ++eL el+P++     ++ s a i+e+A+ ++k+L
  LPERR01G15620.1  3 RLYAELGELIPNL----PPRASTARIVEEAIAFVKEL 35
                     5799********6....389***************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.826135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-5246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.6E-4444IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2606.9E-479127No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 137 aa     Download sequence    Send to blast
MSRLYAELGE LIPNLPPRAS TARIVEEAIA FVKELRGKAA ELEAYRSVAA VARGGGDGAE  60
VVACGNTSCF AVRLPAAWPG ALTRVVEVFQ RHGVAVLAVA VARDGEEYTA VTVTTAAVAP  120
RILERIKVEI ICAACSV
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR01G15620.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025878346.17e-40uncharacterized protein LOC112937659
TrEMBLA0A0D9V1K75e-90A0A0D9V1K7_9ORYZ; Uncharacterized protein
STRINGLPERR01G15620.18e-91(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91411931