PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G15780.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family MYB_related
Protein Properties Length: 304aa    MW: 31718.5 Da    PI: 7.8268
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G15780.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.92e-12142186347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ l++ +  ++G+g+W++I+r +   Rt+ q+ s+ qky
  LPERR01G15780.1 142 PWTEEEHRLFLLGLDKFGKGDWRSISRNFVISRTPTQVASHAQKY 186
                      7*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.961474IPR001005SANT/Myb domain
PROSITE profilePS500904.6461672IPR017877Myb-like domain
CDDcd001670.00111872No hitNo description
PROSITE profilePS5129416.873135191IPR017930Myb domain
SuperFamilySSF466897.18E-17137192IPR009057Homeodomain-like
TIGRFAMsTIGR015574.3E-17139189IPR006447Myb domain, plants
SMARTSM007172.3E-10139189IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.5E-11140185IPR009057Homeodomain-like
PfamPF002497.5E-11142186IPR001005SANT/Myb domain
CDDcd001671.04E-9142187No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009651Biological Processresponse to salt stress
GO:0009733Biological Processresponse to auxin
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MTSTATTTTA TPTPASAWTK EDNKAFENAV ASCAATPPAE GSPDDDWFAA LAASVPGARS  60
PEELRLHYEA LVEDVAAIEA GRVPLPRYAG EESASPPDSA AATPKDGGGG HRRDERKSGG  120
GGYDGGSKSC SKAEQERRKG IPWTEEEHRL FLLGLDKFGK GDWRSISRNF VISRTPTQVA  180
SHAQKYFIRL NSMNRDRRRS SIHDITSVTA GDVAAAAAAA QQAGPITGHQ LATGSPAAAL  240
GPPGMKHPGG PIPMYGGAPM GHPVAAGHMM QPAAVGTPVM FPPGHHPPYV VPVGYPAPPA  300
KMHQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to 5'-TATCCA-3' elements in gene promoters. Derepresses strongly the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Functions with GAMYB to integrate diverse nutrient starvation and gibberellin (GA) signaling pathways during germination of grains. Sugar, nitrogen and phosphate starvation signals converge and interconnect with GA to promote the co-nuclear import of MYBS1 and GAMYB, resulting in the expression of a large set of GA-inducible hydrolases, transporters, and regulators that are essential for mobilization of nutrient reserves in the endosperm to support seedling growth (PubMed:22773748). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:22773748}.
UniProtTranscription activator that binds to 5'-TATCCA-3' elements in gene promoters. Derepress strongly the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. {ECO:0000250|UniProtKB:Q8LH59}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR01G15780.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by sucrose and gibberellic acid (GA). {ECO:0000269|PubMed:12172034}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002455466.11e-140transcription factor MYBS1
SwissprotB8A9B21e-132MYBS1_ORYSI; Transcription factor MYBS1
SwissprotQ8LH591e-132MYBS1_ORYSJ; Transcription factor MYBS1
TrEMBLA0A0D9V1M40.0A0A0D9V1M4_9ORYZ; Uncharacterized protein
STRINGLPERR01G15780.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP94663041
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49010.17e-54MYB family protein
Publications ? help Back to Top
  1. Hong YF, et al.
    Convergent starvation signals and hormone crosstalk in regulating nutrient mobilization upon germination in cereals.
    Plant Cell, 2012. 24(7): p. 2857-73
    [PMID:22773748]