PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR01G16270.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

bZIP

Protein Properties

Length: 127aa MW: 13380.2 Da PI: 9.9204

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR01G16270.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	26.8	1.1e-08	46	74	5	33
CHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLee 33 ++ +rk++NR++A+rsR+RK+++++eL+ LPERR01G16270.1 46 RKRKRKESNRLSAQRSRARKQQQLDELAA 74 6789***********************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	3.8E-8	44	75	No hit	No description
PROSITE profile	PS50217	8.749	44	75	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	9.14E-7	46	76	No hit	No description
CDD	cd14702	1.63E-13	47	75	No hit	No description
PROSITE pattern	PS00036	0	49	64	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 127 aa Download sequence Send to blast
MASPGVVYSV TTTPTSSAGS DQVFVAGAGD DAPRRPAAAP AVMEERKRKR KESNRLSAQR 60 SRARKQQQLD ELAAQWLHAA ASFAAAPPPP TMSTAAVFPG AGAGGFMMPA LYQPPLLDAT 120 TLQCNYY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	45	50	RKRKRK
2	45	51	RKRKRKE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR01G16270.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK110526	1e-55	AK110526.1 Oryza sativa Japonica Group cDNA clone:002-167-H10, full insert sequence.
GenBank	AP004233	1e-55	AP004233.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OSJNBa0065J17.
GenBank	AP004361	1e-55	AP004361.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OSJNBa0062A24.
GenBank	AP014957	1e-55	AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBank	CP012609	1e-55	CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
GenBank	CT841883	1e-55	CT841883.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C106I19, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015641337.1	1e-32	ocs element-binding factor 1
TrEMBL	A0A0D9V1T3	2e-86	A0A0D9V1T3_9ORYZ; Uncharacterized protein
STRING	LPERR01G16270.1	4e-87	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13757	24	28