PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G16660.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family Nin-like
Protein Properties Length: 438aa    MW: 48182.5 Da    PI: 5.187
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G16660.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK83.81.7e-26270319352
           RWP-RK   3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                      ++i +e+l++yF++pi+ AA+e++v+lTvLK++CR++G++RWPhRk+ksl
  LPERR01G16660.1 270 DHIGFEELRRYFYMPITRAAREMNVGLTVLKKRCRELGVARWPHRKMKSL 319
                      6899********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.985254339IPR003035RWP-RK domain
PfamPF020428.5E-21272319IPR003035RWP-RK domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MEMHECSYYG GIDDVDVDWF QPLASIPPLP YCSSWPPSPP FLLSEHDDIL HAAGDHGAAL  60
PGIGGCSTAD IVIKKEEDSP VDYQLPFPAL PDADVHHHIY HPLHPDHFVP SPAAAGDGAA  120
AAVGRHHDDD DDDLLMLPFC DIDLDAFAED ARDADVVVHD ELKPSPPHHQ INLDAANAQF  180
DVDGVNQQHD AVDDDQDSLS MVVVEGYEMG ALKHAAEQKP QLLPAAGTTE TSTVSPLLLP  240
PPRRVMRSRG RVGSSSAAAG GGNASTTRLD HIGFEELRRY FYMPITRAAR EMNVGLTVLK  300
KRCRELGVAR WPHRKMKSLK SLILNVQEMG RKGMAAEAMR RELEGLEKCC ALMEQDPAVE  360
LTERTKKLRQ ACFKENYKRR RAAAVDMMML DHCFNDLATG ADLDVHGYQQ QLALPLPPPP  420
PPRAPTAGNS RRIEFLGY
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR01G16660.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0039339e-72AP003933.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OSJNBa0066C06.
GenBankAP0042589e-72AP004258.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OSJNBa0024F24.
GenBankAP0149579e-72AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126099e-72CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638205.11e-126uncharacterized protein LOC107276829
TrEMBLA0A0D9V1Y10.0A0A0D9V1Y1_9ORYZ; Uncharacterized protein
STRINGLPERR01G16660.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128882330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53040.18e-37RWP-RK domain-containing protein