PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G17090.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bHLH
Protein Properties Length: 453aa    MW: 46183.8 Da    PI: 5.9957
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G17090.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.69.3e-08355395954
                      HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       r+RR+ri +++  L++l+P       +K++ a++L +A +Y++ L
  LPERR01G17090.1 355 ARQRRERISERLRVLQKLVPGG-----TKMDTASMLDEAANYLRFL 395
                      69******************87.....8***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.148346395IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.01E-13352405IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-13352401IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.33E-12352400No hitNo description
Gene3DG3DSA:4.10.280.108.0E-11354404IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.0E-5355395IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MDRGFNEMIL SESVWNGGGG GGGDGDCGVV ALPPEVGGVN AAMVNDASGM TVLERLVLDE  60
ALAAAILELQ GIQSSACGGG GAGGKVAPPP VGVNEAAVAF SAMATATPAY ADVDADVLQR  120
QQQHRHRHHG MMGIASSDYD VAPATPVTLS SVPPPPPLAF ATVDGGVVNA AAVFSSGIGA  180
NDDVDAAAAS ATAAVPMMPT TSQCEKATAR KPQRRPGRKR KAAAAASPAD IASAHENPLC  240
SLLASSNTSG DGIQIAFSTS AAAASTTKRA KPSLSSSSSS ISFDGRGAHG GNGGVGGDDP  300
LYEPDTEALA QVKEMIYRAA AMRPVTLGAD TADAAGERPR RRNVRISSDP QTVAARQRRE  360
RISERLRVLQ KLVPGGTKMD TASMLDEAAN YLRFLKSQIR ELQTLDRRNF PNNAIMNTAM  420
ATASAASGNA AMAAAFNFPE TLGCGGGGVE QMI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1355360RQRRER
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR01G17090.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0031411e-143AP003141.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0002B05.
GenBankAP0032961e-143AP003296.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0697C12.
GenBankAP0149571e-143AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126091e-143CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629736.11e-147transcription factor LATE FLOWERING-like
RefseqXP_015629741.11e-147transcription factor LATE FLOWERING-like
TrEMBLA0A0D9V2370.0A0A0D9V237_9ORYZ; Uncharacterized protein
STRINGLPERR01G17090.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP154637106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.15e-35bHLH family protein