PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G17320.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family LBD
Protein Properties Length: 255aa    MW: 27201.5 Da    PI: 5.844
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G17320.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260118.83.2e-37411441100
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal....peeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                      aCaaCk++rrkC+++C lapyfpa++p++f+n+h+lFG +n+l+++k++     +e+r+da++s++ye++ar  dPv Ga+g+ +kl+ +l++l
  LPERR01G17320.1  41 ACAACKHQRRKCTPECELAPYFPADRPARFRNAHRLFGIKNILRIMKKAnalgGQETRDDAATSVIYESDAREADPVFGAAGIARKLSLELNSL 134
                      7**********************************************9966666788************************************* PP

           DUF260  91 kaelallkee 100
                      +aela+++++
  LPERR01G17320.1 135 EAELAAVRSQ 144
                      ******9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.11240145IPR004883Lateral organ boundaries, LOB
PfamPF031951.8E-3341142IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MVDGEDGASS SGHSHSSNTG TPQPQPHELQ PAPPPPPPNQ ACAACKHQRR KCTPECELAP  60
YFPADRPARF RNAHRLFGIK NILRIMKKAN ALGGQETRDD AATSVIYESD AREADPVFGA  120
AGIARKLSLE LNSLEAELAA VRSQVESFRR AAAAQQPRPP APTAATALVV PQAGLNLNPI  180
AQAPYFPPPM AAMMLQEQTA ANQVHVAAPD DVHQPVDDYI VEPLDAVDAA TITTAAERHE  240
DDRAPLARAT TEKAP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-22321482114LOB family transfactor Ramosa2.1
5ly0_B2e-22321482114LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR01G17320.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D9V2620.0A0A0D9V262_9ORYZ; Uncharacterized protein
STRINGLPERR01G17320.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP158291113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13850.11e-22LOB domain-containing protein 22