PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR01G17330.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

LBD

Protein Properties

Length: 186aa MW: 20613.9 Da PI: 9.2558

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR01G17330.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	44.3	5e-14	30	140	2	100
DUF260 2 CaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeer.............edamsslvyeAearardPvyGavgvilk 82 Ca+C +l+ +C + C apyfpa++ ++f ++ +lFG +++++ l+a + r + m+++v ++a + +P + ++ l+ LPERR01G17330.1 30 CASCTHLGLTCRPRCRTAPYFPADRLERFLYACRLFGLKTIVRSLRAE-ADGRmgecrwfwnksnkTPSMAAIVLLSDAAVAEPERVIRKFELH 122 *********************************************995.333445666777777668899999999999999999999999999 PP DUF260 83 lqqqleqlkaelallkee 100 q++l+++++ l+++ ++ LPERR01G17330.1 123 RQRRLQCKANRLQKQSQQ 140 999999999888887765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	10.345	28	141	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.1E-11	30	135	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 186 aa Download sequence Send to blast
MSTSTALAPP AGRPPCAART HVDAAPRPTC ASCTHLGLTC RPRCRTAPYF PADRLERFLY 60 ACRLFGLKTI VRSLRAEADG RMGECRWFWN KSNKTPSMAA IVLLSDAAVA EPERVIRKFE 120 LHRQRRLQCK ANRLQKQSQQ PRQQPAMLPD PYAVVAMETV YDSTSDMDAD AGLATCLQML 180 CLSSAA

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR01G17330.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0D9V263	1e-133	A0A0D9V263_9ORYZ; Uncharacterized protein
STRING	LPERR01G17330.1	1e-134	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP16910	9	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13850.1	7e-09	LOB domain-containing protein 22