PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G17340.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family LBD
Protein Properties Length: 192aa    MW: 20787.2 Da    PI: 10.617
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G17340.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26055.61.5e-1731138197
           DUF260   1 aCaaCkvlrrkCakd.CvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeer..........edamsslvyeAearardPvyGavgvilkl 83 
                      +CaaC +l+ +C+   C++apyfpae++++f+++ +lFG +++l+ ++a  +             +  m+++v+ A+a a dP + +  v lkl
  LPERR01G17340.1  31 PCAACTLLGLTCTLArCPMAPYFPAERRERFRYAFHLFGIKTILRSIRAQVPGPAsssisslwksTFGMAAIVFTADASAADPARLSDDVRLKL 124
                      7***********9655*******************************9984444335677888777889************************* PP

           DUF260  84 qqqleqlkaelall 97 
                      +qql++lka  a l
  LPERR01G17340.1 125 SQQLDRLKAFRAIL 138
                      *******9977665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508919.02330142IPR004883Lateral organ boundaries, LOB
PfamPF031951.3E-1231133IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MPAPASTPIT PPPPAPGRLP CSRQYVGPLL PCAACTLLGL TCTLARCPMA PYFPAERRER  60
FRYAFHLFGI KTILRSIRAQ VPGPASSSIS SLWKSTFGMA AIVFTADASA ADPARLSDDV  120
RLKLSQQLDR LKAFRAILMQ QKQQNKKRPQ QQPPYAVETA HDSTSTVDAA AALATRMQML  180
RLNAAAANGE LP
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR01G17340.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D9V2641e-136A0A0D9V264_9ORYZ; Uncharacterized protein
STRINGLPERR01G17340.11e-136(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP153751118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19820.17e-08LOB domain-containing protein 9