PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR01G17360.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

LBD

Protein Properties

Length: 176aa MW: 18955.9 Da PI: 9.9458

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR01G17360.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	61.3	2.6e-19	55	141	18	100
DUF260 18 lapyfpaeqpkkfanvhklFGasnvlkllkal....peeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 ++ f +++ +f+n+++lF+ +n+l+++k++ ee+r+da++s++ye++ar dPv Ga+g+ kl+ +l++l+aela++ ++ LPERR01G17360.1 55 WRRTFRPTSRPRFQNAQRLFSIKNILRIMKKAtavgGEETRDDAVTSVIYESDAREADPVFGAAGITCKLSLELNRLAAELAAVSSQ 141 56788888899*****************9977767889****************************************99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	10.94	31	142	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.3E-15	56	138	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 176 aa Download sequence Send to blast
MFDENDDEFS SGDSKSPNTD TPQPESPPPP PPSPPTRRAR RASTSSGSAR RSARWRRTFR 60 PTSRPRFQNA QRLFSIKNIL RIMKKATAVG GEETRDDAVT SVIYESDARE ADPVFGAAGI 120 TCKLSLELNR LAAELAAVSS QVEFNLGSSA ERGGSATAAA GSRSHGPHHP PSGFEF

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR01G17360.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015638299.1	1e-20	LOB domain-containing protein 11
TrEMBL	A0A0D9V266	1e-123	A0A0D9V266_9ORYZ; Uncharacterized protein
STRING	LPERR01G17360.1	1e-124	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP15829	11	13

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	3e-07	LOB domain-containing protein 1