PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G17380.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family LBD
Protein Properties Length: 105aa    MW: 11486.1 Da    PI: 6.4992
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G17380.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26073.63.7e-231799275
           DUF260  2 CaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal....peeer.....edamsslvyeAearardPvyG 75
                     Ca+C++++r+C++dC lap+fpa++pk+f+++ ++FG++++l+ l+a     + e+r     ++ m+ +vy A+ar++dP  +
  LPERR01G17380.1 17 CAVCAHQGRTCPPDCRLAPHFPADKPKRFEYAYQIFGMRRILRALEADaaglDAETRrreygNIGMAGIVYTADARVEDPGLS 99
                     *********************************************98545554454446777889***************765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089114.18815105IPR004883Lateral organ boundaries, LOB
PfamPF031959.4E-181796IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 105 aa     Download sequence    Send to blast
MADPAAPLAT HEGHETCAVC AHQGRTCPPD CRLAPHFPAD KPKRFEYAYQ IFGMRRILRA  60
LEADAAGLDA ETRRREYGNI GMAGIVYTAD ARVEDPGLSV FLIAN
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR01G17380.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015640499.12e-15LOB domain-containing protein 22
TrEMBLA0A0D9V2682e-71A0A0D9V268_9ORYZ; Uncharacterized protein
STRINGLPERR01G17380.14e-72(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16910911
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47870.11e-12LOB domain-containing protein 27