PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR01G17400.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

LBD

Protein Properties

Length: 141aa MW: 15344 Da PI: 4.7724

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR01G17400.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	40.3	9.2e-13	17	70	47	100
DUF260 47 kalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +++++ +r + m +vy A+ar++dPv Ga+g ++kl+q+l++lkae a+++++ LPERR01G17400.1 17 AETRRRNRIHSMVGIVYTADARVEDPVLGAYGRVQKLRQELARLKAEHAARQQQ 70 5667888999**************************************999987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03195	2.1E-7	19	68	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 141 aa Download sequence Send to blast
MERILRSLEA DAAGLNAETR RRNRIHSMVG IVYTADARVE DPVLGAYGRV QKLRQELARL 60 KAEHAARQQQ QETEIVVVQD KEDDERSTAM DPAEPPSGAV DVAAAAEVTS ASGDHEDAAV 120 PPADDAAPPT KRRKPNPKEL D

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR01G17400.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0D9V270	9e-95	A0A0D9V270_9ORYZ; Uncharacterized protein
STRING	LPERR01G17400.1	1e-95	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP16910	9	11