PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G17790.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family WRKY
Protein Properties Length: 247aa    MW: 26685.8 Da    PI: 8.9642
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G17790.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.64.1e-31130188159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDgy+WrKYG+K+vk+s++pr+YYrC+s+gC+vkk+ver+++d ++v++tY g Hnh+
  LPERR01G17790.1 130 LDDGYRWRKYGKKMVKNSPNPRNYYRCSSEGCRVKKRVERARDDARFVVTTYDGVHNHP 188
                      59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.9E-33117190IPR003657WRKY domain
SuperFamilySSF1182903.53E-28123190IPR003657WRKY domain
PROSITE profilePS5081133.35125190IPR003657WRKY domain
SMARTSM007741.1E-36130189IPR003657WRKY domain
PfamPF031062.3E-24131188IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0050832Biological Processdefense response to fungus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MSSYSSLLSL SPGEYHHQIG GGSDDMAVAA AAVSSYLSFD DMEDIVGGYY DPPKADFHSK  60
HHEPTSLLQG ADEYKNGEMR EQSVAAVVMS SSGLSNHGKI NKVPTPAVGH AKSKNGSKIA  120
FKTRSEVDVL DDGYRWRKYG KKMVKNSPNP RNYYRCSSEG CRVKKRVERA RDDARFVVTT  180
YDGVHNHPAP LHNPRLQYNQ HGCAGGGVGY SVIGGPAAAA GGRRLGLEEA EVIALFRGTT  240
ATSLQLP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-26121190877Probable WRKY transcription factor 4
2lex_A2e-26121190877Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR01G17790.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1085221e-120AK108522.1 Oryza sativa Japonica Group cDNA clone:002-144-B05, full insert sequence.
GenBankAY3418461e-120AY341846.1 Oryza sativa (japonica cultivar-group) WRKY5 mRNA, complete cds.
GenBankCT8313671e-120CT831367.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI006O16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635031.11e-81WRKY transcription factor SUSIBA2
TrEMBLA0A0D9V2C00.0A0A0D9V2C0_9ORYZ; Uncharacterized protein
STRINGLPERR01G17790.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44137206
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26170.12e-37WRKY DNA-binding protein 50