PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G17870.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family WRKY
Protein Properties Length: 253aa    MW: 26863.1 Da    PI: 9.5001
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G17870.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY85.93.7e-27130190159
                      ---SS-EEEEEEE--TT-S.S-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgse.fprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      ++Dg++WrKYGqK+ kg++ +pr+YYrCt a gCpvkk+v+r+a+d +v+++tY g Hnh+
  LPERR01G17870.1 130 VKDGCHWRKYGQKTAKGNPnCPRAYYRCTGApGCPVKKQVQRCAHDASVLVTTYDGVHNHP 190
                      58***************9736********999****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.7E-28118191IPR003657WRKY domain
SuperFamilySSF1182901.83E-23124191IPR003657WRKY domain
PROSITE profilePS5081124.719125192IPR003657WRKY domain
SMARTSM007743.5E-32130191IPR003657WRKY domain
PfamPF031063.6E-24131190IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MNTFAFFRDE EQKDAEKVYR HHTIGDEPGF LSLGLSLRSS PDAAGYPYAS KKDESVLNGG  60
DVGYLALALR CHTDAEPTTT THAKRQKTTT SNTRGEYGNA AAASSSTLTT TPANRPGRVV  120
LRTRCGEPTV KDGCHWRKYG QKTAKGNPNC PRAYYRCTGA PGCPVKKQVQ RCAHDASVLV  180
TTYDGVHNHP VTPYAAALPP PSAAATTSPA DAVAKAVSDP RVRAAVAAAV ASYVRGQSAA  240
GGLFNFHNLA PRC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A9e-21118193275WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR01G17870.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642021.13e-71probable WRKY transcription factor 72
TrEMBLA0A0D9V2D00.0A0A0D9V2D0_9ORYZ; Uncharacterized protein
STRINGLPERR01G17870.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP143192226
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68150.11e-37WRKY DNA-binding protein 9