PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G18690.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family MYB_related
Protein Properties Length: 306aa    MW: 32225.8 Da    PI: 7.9144
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G18690.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.53e-13131175347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +W++eE+ l++ + ++lG+g+W+ I+r   ++Rt+ q+ s+ qk+
  LPERR01G18690.1 131 PWSEEEHRLFLVGLEKLGKGDWRGISRSYVTTRTPTQVASHAQKF 175
                      8******************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501588.532318IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129417.077124180IPR017930Myb domain
SuperFamilySSF466898.22E-17125181IPR009057Homeodomain-like
TIGRFAMsTIGR015575.8E-17127179IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.608.3E-10128171IPR009057Homeodomain-like
SMARTSM007178.5E-10128178IPR001005SANT/Myb domain
CDDcd001672.55E-9131176No hitNo description
PfamPF002491.5E-10131174IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MARKCSHCGN YGHNSRTCSS SSSSSAAGHR DNNTTMLSDG GGSGLRLFGV QVHVGDGGGG  60
GLSMKKSYSM GCLQLAAAPA AATPSSLVSP SSSSSSSMLL SIEEGLERAS NGYLSDGPHG  120
RIVQERKKGV PWSEEEHRLF LVGLEKLGKG DWRGISRSYV TTRTPTQVAS HAQKFFLRQT  180
SIGKKKRRSS LFDMVPICEN TIRVSEQLSG EDASTSLSSL SLMNTPRQHE SSDRAAAAID  240
LNSTEEDDTV SAVSSGSGAS AARPLFPVAL MDQQQQQASL GHGHHHCTPL DLELGMSLSS  300
TPSIGT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1183187KKKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR01G18690.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0615001e-174AK061500.1 Oryza sativa Japonica Group cDNA clone:006-309-D10, full insert sequence.
GenBankAK1034321e-174AK103432.1 Oryza sativa Japonica Group cDNA clone:J033128P13, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648805.11e-136transcription factor KUA1
TrEMBLA0A0D9V2M80.0A0A0D9V2M8_9ORYZ; Uncharacterized protein
STRINGLPERR01G18690.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP49323066
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47390.12e-43MYB_related family protein