PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G20100.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family WRKY
Protein Properties Length: 360aa    MW: 38266.1 Da    PI: 6.9919
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G20100.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.23.1e-32200257259
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      +Dgy+WrKYGqK vk+s++prsYYrCt+++C vkk+vers +dp++v++tYeg+H+h+
  LPERR01G20100.1 200 EDGYRWRKYGQKAVKNSPYPRSYYRCTTPKCGVKKRVERSYQDPSTVITTYEGQHTHH 257
                      8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.5E-34184259IPR003657WRKY domain
SuperFamilySSF1182907.32E-29192259IPR003657WRKY domain
PROSITE profilePS5081131.066194259IPR003657WRKY domain
SMARTSM007741.6E-37199258IPR003657WRKY domain
PfamPF031062.1E-25200257IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MSSGGGGDRH GTYHHQLGHG GHLARGDGAA DYVYNTSDME SFFFTQTGGA VGGAGDTGGG  60
GADEIMPYSS ITDYLQGFLD PSGLARHLDV PCPSSQDTAV KQELSVDVTS HESQATGGAA  120
GEGAAPNSSA SFSSSDGEAE EGGKSRRCKK GGQAKAEEEE GKDEDGENSK KPNKPKKKAE  180
KRQRQPRVAF LTKSEVDHLE DGYRWRKYGQ KAVKNSPYPR SYYRCTTPKC GVKKRVERSY  240
QDPSTVITTY EGQHTHHSPA SLRGGGGGIG GHHLFMPGVH GLPPSHLMAP AGFHPELMGL  300
MHHPMAAASN PSMYLPSVAA QPAAGAISTV PPPPLQQHHF TDYAMLQDLF PSTMPSNNHD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-291922601078Probable WRKY transcription factor 4
2lex_A3e-291922601078Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR01G20100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1087450.0AK108745.1 Oryza sativa Japonica Group cDNA clone:002-150-E09, full insert sequence.
GenBankAY3418560.0AY341856.1 Oryza sativa (japonica cultivar-group) WRKY16 mRNA, complete cds.
GenBankHQ8588570.0HQ858857.1 Oryza sativa Japonica Group isolate UT1620 WRKY transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015626307.11e-153WRKY transcription factor 71
TrEMBLA0A0D9V3490.0A0A0D9V349_9ORYZ; Uncharacterized protein
STRINGLPERR01G20100.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62337173
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29860.12e-43WRKY DNA-binding protein 71