PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G20470.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family MYB_related
Protein Properties Length: 105aa    MW: 11252.3 Da    PI: 5.7113
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G20470.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.12.3e-092064344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                      WT++  +l+ ++ + + ++   +W+ +ar+mg ++++++++ ++
  LPERR01G20470.1 20 VWTKQQNKLFERGLAVYDTDapdRWHNVARYMGGTKSAEEVRRHY 64
                     7*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.3941672IPR017884SANT domain
SMARTSM007171.1E-71770IPR001005SANT/Myb domain
SuperFamilySSF466891.64E-111975IPR009057Homeodomain-like
PfamPF002492.9E-72064IPR001005SANT/Myb domain
CDDcd001673.01E-72167No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 105 aa     Download sequence    Send to blast
MASNSKGSSS ASASAPSSSV WTKQQNKLFE RGLAVYDTDA PDRWHNVARY MGGTKSAEEV  60
RRHYELLYDD VELIEAGRAP FSLGYGATPP AGRGGADASV DVAER
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-2021811170RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR01G20470.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638756.18e-40protein RADIALIS-like 3
SwissprotQ6NNN04e-25RADL3_ARATH; Protein RADIALIS-like 3
TrEMBLA0A0D9V3B31e-70A0A0D9V3B3_9ORYZ; Uncharacterized protein
STRINGLPERR01G20470.12e-71(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27038230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.26e-25RAD-like 6