PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G20480.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family MYB_related
Protein Properties Length: 85aa    MW: 9593.99 Da    PI: 9.7286
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G20480.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding271e-08852244
                     SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                       WT+   +++ +a + + ++   +W+ Iar +g g+++ ++k ++
  LPERR01G20480.1  8 AQWTAKQNKQFEQALAVYDKDtpeRWHNIARAVG-GKSPDEVKRYY 52
                     57********************************.********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.503560IPR017884SANT domain
SMARTSM007172.2E-6658IPR001005SANT/Myb domain
PfamPF002492.5E-6852IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-7962IPR009057Homeodomain-like
SuperFamilySSF466894.91E-13963IPR009057Homeodomain-like
CDDcd001671.15E-71052No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009630Biological Processgravitropism
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0010114Biological Processresponse to red light
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 85 aa     Download sequence    Send to blast
MASMSMRAQW TAKQNKQFEQ ALAVYDKDTP ERWHNIARAV GGKSPDEVKR YYDLLVQDVK  60
HIEAGKVPFP AYRCLPPPGA AAKGY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A6e-3110741175RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Required for female gametophyte development. {ECO:0000269|PubMed:15634699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR01G20480.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9695424e-61EU969542.1 Zea mays clone 331755 DNA binding protein mRNA, complete cds.
GenBankKJ7284094e-61KJ728409.1 Zea mays clone pUT6714 MYB-related transcription factor (MYBR41) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015692060.12e-43PREDICTED: LOW QUALITY PROTEIN: protein RADIALIS-like 4
SwissprotQ9SIJ53e-31RADL2_ARATH; Protein RADIALIS-like 2
TrEMBLA0A0D9V3B43e-57A0A0D9V3B4_9ORYZ; Uncharacterized protein
STRINGLPERR01G20480.15e-58(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27038230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.21e-32RAD-like 6
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Yang B, et al.
    RSM1, an Arabidopsis MYB protein, interacts with HY5/HYH to modulate seed germination and seedling development in response to abscisic acid and salinity.
    PLoS Genet., 2018. 14(12): p. e1007839
    [PMID:30566447]