PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR01G20500.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

ZF-HD

Protein Properties

Length: 1790aa MW: 164308 Da PI: 9.9642

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR01G20500.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	86.4	2.9e-27	1596	1647	3	58
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 + rY+eCl+NhAa+ Ggh+vDGCgEfmp+ +t + l C ACgCHR+FHRr+++ LPERR01G20500.1 1596 RSRYHECLRNHAAASGGHVVDGCGEFMPA----STEDPLACEACGCHRSFHRRDPS 1647 689***********************9....5678**************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	6.0E-26	1581	1645	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	1.6E-22	1597	1645	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	1.2E-23	1598	1645	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	24.501	1599	1645	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3D	G3DSA:1.10.10.60	8.6E-25	1708	1779	IPR009057	Homeodomain-like
SuperFamily	SSF46689	7.62E-15	1711	1778	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	6.0E-22	1718	1773	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1790 aa Download sequence Send to blast
MVKFHSVNLI LAVLLISLWT VTPVLSYSEQ DYGRRVKNEK KPDHDKDMSK EYGKRVEHHV 60 NQAAADAALV LKAKEEIAKR TAKHIQSSIA SARVAIHIKE EMLEKTAEVM SRMAGEVSVQ 120 LSKVAKEHTK VAVGDIAAAL KYKQEILKRA AERVKDVSED VNMANKAKQE ILQKVAHDLG 180 KVAGDMATSM AKMAEVAAGV AGGAAAGVAT GIAGGFAGGV SGGARVHISG GIHGNIHFGA 240 GARAGANAAA SAGAEAKASK SGSSNVGGNA EEYVGGSGSA SEGTKVEGNG NAKAGASAGV 300 GISGGAKVGG GVGGNAGVGS NANVGLGVGA SAGISESAKV GAGIGGSGGV GSNANANAHA 360 GLGVGISGGA KVGGGVGGNA GAGSNTDGYT NAGAGISRST KVGGAVEENA GVGSNAHANA 420 GLGASVGAGI SGGAKVGRGV GGNAGIGSNA NAGLNAGADI SGNAKVGAEM GGNVGVGSNA 480 NAGLGAGVAV SGGAKVGGGI GGNMGAGSNA NANVGLGAGV SASGGAKVGG GVGGNASVSA 540 NANGYAGVGA GISGSGKVGG AIEGNAGVGS NAKVNTGLGA GVGVGISGGA KVGAGVGGNA 600 DAGSNANASL GVSAGVSGSA KVGADAGGNL GVGSNANAGL GAGVGISGGA KVGGGIGGSV 660 GAGSNANVGA DISGNSKVGG AVEGNAGAGS KANANVGLSA SAAISGGAKV GGGISGNAGV 720 GSNANAGLGV GAGISGSAKV GAGIGGNVGV NSNANVGIGA GAGISGGAKV DSDIGGSASV 780 GSNANAGLVG AGIGISGGTK VGGGIGGNAG VSSDADGYAK TGAEKTKNTK AGSGENGGIG 840 SNANTNVGFD AGAGISGGAK VGGGTGGNAG VDSNANANAN ADLSAGVGIS AGAKAGGAIG 900 GNMAGVVNAN AGLGASASKD AKIGGGIGGN IRSGGNVNAG VNAGLGVGVS KDAKIGGDTG 960 GNVGGGGNVK ADANVDLGAS AYKDTKIGTE AKGNIVGGGN ANAGIGASIS KEAKINGGIE 1020 GNVGDGGNAN AGANAGIGAS IYKEAKINGG IGGNTGGGGN ANAGLGASVG ISGGAKIGGN 1080 IKENVNGSSN GNDEKSGANK KSKDSEAYVG GKSSTNVGAN AGVGISGGAK IGGNVGGNAG 1140 GNANGGVGAN AGVSGDSKVG GDIRGNLGGG DKSKTNVGAN GGLGISGDAK VGGSAGGNIG 1200 GNANSGVVAN AGVGAGVGFS GGARIGAGIG GNVGGNGNAN ADVGSSPNVY GNNKVGGGVG 1260 GKAGASANVG ANVGIGAGFG VSGGGRAGAS VGENGNVGIG GNANAGANVA GGTSLGAHFG 1320 ASKHVGVGFG ANAGIGGGFN FGASGKANAG ANSAIGGSGG SNTGIGASAS KSVGAGVDVG 1380 AGSNAGIGAS ASKSVGVDAG AGSNTGIGAS ASKSVGAGVD AGAGSNAGIG ASASKSVGAG 1440 IGVGAGSNVG IGASASKSVG AGVGVGADSN AGVGVSASKS VGAGAGIGAY ANGGIGASAS 1500 KSVSGGADAD AKVGGNDGVG ASGKDKTDVE EGASKEKIDG EEEASKSAGA TANKGYLHVR 1560 GMELSGHDED AGYAGGGCSP PTPLHRGPAA ETTTTRSRYH ECLRNHAAAS GGHVVDGCGE 1620 FMPASTEDPL ACEACGCHRS FHRRDPSPAR AGAAPLLLPL HRPASVNPRA PALLLTPAGS 1680 KQGLPLPVYG TTPSSGTGTT TASSSEERLR PSPAPARRQS RTTFTREQKE QMLAFAESVG 1740 WRIQRQEEAT VEQFCTQVGV RRQAFKVWMH NNKHSSKQKQ QQQLQENRQE

Sequence ? help Back to Top

Protein Sequence Length: 1790 aa Download sequence Send to blast

MVKFHSVNLI LAVLLISLWT VTPVLSYSEQ DYGRRVKNEK KPDHDKDMSK EYGKRVEHHV  60
NQAAADAALV LKAKEEIAKR TAKHIQSSIA SARVAIHIKE EMLEKTAEVM SRMAGEVSVQ  120
LSKVAKEHTK VAVGDIAAAL KYKQEILKRA AERVKDVSED VNMANKAKQE ILQKVAHDLG  180
KVAGDMATSM AKMAEVAAGV AGGAAAGVAT GIAGGFAGGV SGGARVHISG GIHGNIHFGA  240
GARAGANAAA SAGAEAKASK SGSSNVGGNA EEYVGGSGSA SEGTKVEGNG NAKAGASAGV  300
GISGGAKVGG GVGGNAGVGS NANVGLGVGA SAGISESAKV GAGIGGSGGV GSNANANAHA  360
GLGVGISGGA KVGGGVGGNA GAGSNTDGYT NAGAGISRST KVGGAVEENA GVGSNAHANA  420
GLGASVGAGI SGGAKVGRGV GGNAGIGSNA NAGLNAGADI SGNAKVGAEM GGNVGVGSNA  480
NAGLGAGVAV SGGAKVGGGI GGNMGAGSNA NANVGLGAGV SASGGAKVGG GVGGNASVSA  540
NANGYAGVGA GISGSGKVGG AIEGNAGVGS NAKVNTGLGA GVGVGISGGA KVGAGVGGNA  600
DAGSNANASL GVSAGVSGSA KVGADAGGNL GVGSNANAGL GAGVGISGGA KVGGGIGGSV  660
GAGSNANVGA DISGNSKVGG AVEGNAGAGS KANANVGLSA SAAISGGAKV GGGISGNAGV  720
GSNANAGLGV GAGISGSAKV GAGIGGNVGV NSNANVGIGA GAGISGGAKV DSDIGGSASV  780
GSNANAGLVG AGIGISGGTK VGGGIGGNAG VSSDADGYAK TGAEKTKNTK AGSGENGGIG  840
SNANTNVGFD AGAGISGGAK VGGGTGGNAG VDSNANANAN ADLSAGVGIS AGAKAGGAIG  900
GNMAGVVNAN AGLGASASKD AKIGGGIGGN IRSGGNVNAG VNAGLGVGVS KDAKIGGDTG  960
GNVGGGGNVK ADANVDLGAS AYKDTKIGTE AKGNIVGGGN ANAGIGASIS KEAKINGGIE  1020
GNVGDGGNAN AGANAGIGAS IYKEAKINGG IGGNTGGGGN ANAGLGASVG ISGGAKIGGN  1080
IKENVNGSSN GNDEKSGANK KSKDSEAYVG GKSSTNVGAN AGVGISGGAK IGGNVGGNAG  1140
GNANGGVGAN AGVSGDSKVG GDIRGNLGGG DKSKTNVGAN GGLGISGDAK VGGSAGGNIG  1200
GNANSGVVAN AGVGAGVGFS GGARIGAGIG GNVGGNGNAN ADVGSSPNVY GNNKVGGGVG  1260
GKAGASANVG ANVGIGAGFG VSGGGRAGAS VGENGNVGIG GNANAGANVA GGTSLGAHFG  1320
ASKHVGVGFG ANAGIGGGFN FGASGKANAG ANSAIGGSGG SNTGIGASAS KSVGAGVDVG  1380
AGSNAGIGAS ASKSVGVDAG AGSNTGIGAS ASKSVGAGVD AGAGSNAGIG ASASKSVGAG  1440
IGVGAGSNVG IGASASKSVG AGVGVGADSN AGVGVSASKS VGAGAGIGAY ANGGIGASAS  1500
KSVSGGADAD AKVGGNDGVG ASGKDKTDVE EGASKEKIDG EEEASKSAGA TANKGYLHVR  1560
GMELSGHDED AGYAGGGCSP PTPLHRGPAA ETTTTRSRYH ECLRNHAAAS GGHVVDGCGE  1620
FMPASTEDPL ACEACGCHRS FHRRDPSPAR AGAAPLLLPL HRPASVNPRA PALLLTPAGS  1680
KQGLPLPVYG TTPSSGTGTT TASSSEERLR PSPAPARRQS RTTFTREQKE QMLAFAESVG  1740
WRIQRQEEAT VEQFCTQVGV RRQAFKVWMH NNKHSSKQKQ QQQLQENRQE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR01G20500.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP007251	1e-180	AP007251.1 Oryza sativa Japonica Group genomic DNA, chromosome 1, fosmid clone:OSJNOa234E14.
GenBank	AP014957	1e-180	AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBank	CP012609	1e-180	CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015638769.1	0.0	fibroin heavy chain
TrEMBL	A0A0D9V3B7	0.0	A0A0D9V3B7_9ORYZ; Uncharacterized protein
STRING	LPERR01G20500.2	0.0	(Leersia perrieri)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24660.1	4e-34	homeobox protein 22