PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G20820.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family HD-ZIP
Protein Properties Length: 267aa    MW: 29455 Da    PI: 10.246
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G20820.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.81.9e-18119172356
                      --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      k+ +++keq + Lee F+ n++++ +++e LA kl+L  rqV vWFqNrRa+ k
  LPERR01G20820.1 119 KKLRLSKEQSRLLEESFRLNHTLTPKQKEALAIKLKLRPRQVEVWFQNRRARTK 172
                      67789***********************************************98 PP
2HD-ZIP_I/II120.68e-39119206289
      HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                      kk+rlskeq++lLEesF+ +++L+p++K++la +L+l+prqv+vWFqnrRARtk+kq+E+++e+Lkr++ +l+een+rL++eveeLr+
  LPERR01G20820.1 119 KKLRLSKEQSRLLEESFRLNHTLTPKQKEALAIKLKLRPRQVEVWFQNRRARTKLKQTEMECEYLKRCFGSLTEENRRLQREVEELRA 206
                      9*************************************************************************************94 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.81E-19103175IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.1E-17103172IPR009057Homeodomain-like
PROSITE profilePS5007116.844114174IPR001356Homeobox domain
SMARTSM003891.2E-15116178IPR001356Homeobox domain
CDDcd000863.12E-15117175No hitNo description
PfamPF000461.2E-15119172IPR001356Homeobox domain
PROSITE patternPS000270149172IPR017970Homeobox, conserved site
PfamPF021834.1E-10174207IPR003106Leucine zipper, homeobox-associated
SMARTSM003407.1E-23174217IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MPLIKRLPRL LLLFNLSVSL RLCPVFPAPA LFLLLLLHWL VMGATSPSGL ELTMAVPGLS  60
SSSGSEGAGC NNNNNGGGGG NMRDLDINQP ASGGEEEFPM GSVEEDEEER GVGGPHRPKK  120
LRLSKEQSRL LEESFRLNHT LTPKQKEALA IKLKLRPRQV EVWFQNRRAR TKLKQTEMEC  180
EYLKRCFGSL TEENRRLQRE VEELRAMRVA PPTVLSPHTR QPLPASALTM CPRCERITAA  240
TGPPAARPPS SAAGPSPFHP RRPSAAF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1166174RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
UniProtProbable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR01G20820.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1457270.0AF145727.1 Oryza sativa homeodomain leucine zipper protein (Oshox3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006644426.11e-130PREDICTED: homeobox-leucine zipper protein HOX3
SwissprotQ0JKX11e-130HOX3_ORYSJ; Homeobox-leucine zipper protein HOX3
SwissprotQ9XH381e-130HOX3_ORYSI; Homeobox-leucine zipper protein HOX3
TrEMBLA0A0D9V3G10.0A0A0D9V3G1_9ORYZ; Uncharacterized protein
STRINGLPERR01G20820.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP68263549
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01430.15e-57homeobox-leucine zipper protein 17