PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G21480.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family WRKY
Protein Properties Length: 243aa    MW: 26521.6 Da    PI: 6.9398
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G21480.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY86.72e-2743103158
                      ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                      ldDg++WrKYGqK++ g+++pr+Y+rCt++   gC++ k+v+r++ dp +++++Y+g+H++
  LPERR01G21480.1  43 LDDGFSWRKYGQKDILGAKYPRAYFRCTHRhtqGCHASKQVQRADADPLLFDVVYQGNHTC 103
                      59***************************98999*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.2E-2830104IPR003657WRKY domain
SuperFamilySSF1182909.02E-2537103IPR003657WRKY domain
PROSITE profilePS5081121.8538101IPR003657WRKY domain
SMARTSM007743.7E-3943105IPR003657WRKY domain
PfamPF031069.1E-2644103IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MAAEMERRRR RRLAQWSGAA SWKTLPKWSK QVRVSSVQDI GPLDDGFSWR KYGQKDILGA  60
KYPRAYFRCT HRHTQGCHAS KQVQRADADP LLFDVVYQGN HTCLQSRSTS RPAAEQQQQP  120
PHEQNGGVSV AFIKPAKDEA GLVHEAPFSF NSTAHDGGAA GALLHGGCGV VTTAASMPSP  180
FVSMATSDCV YDQLGGGSMA GVRNVPDVEF ATEAAKSSMA DDIDFIFSLD DDADFLDKYP  240
GYF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-2140103568OsWRKY45
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1512ERRRRRRL
2611RRRRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR01G21480.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6769261e-103AY676926.1 Oryza sativa (indica cultivar-group) transcription factor WRKY98 (WRKY98) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006664979.12e-77PREDICTED: probable WRKY transcription factor 41
TrEMBLA0A0D9V3P30.0A0A0D9V3P3_9ORYZ; Uncharacterized protein
STRINGLPERR01G21480.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33553183
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.22e-36WRKY family protein