PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G21530.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family ERF
Protein Properties Length: 301aa    MW: 31711.9 Da    PI: 4.4228
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G21530.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.78.2e-2099149155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      ++++GVr+++ +g+++AeIrd +     r  r++lg+f+taeeAa+ ++ a+ +l+g
  LPERR01G21530.1  99 TKFRGVRRRP-WGKFAAEIRDpW-----RgVRVWLGTFDTAEEAARVYDSAAIQLRG 149
                      69********.**********88.....55*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.43E-2999159No hitNo description
PfamPF008471.3E-1299149IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-22100159IPR016177DNA-binding domain
PROSITE profilePS5103223.143100157IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.2E-30100158IPR001471AP2/ERF domain
SMARTSM003801.1E-35100163IPR001471AP2/ERF domain
PRINTSPR003672.4E-10101112IPR001471AP2/ERF domain
PRINTSPR003672.4E-10123139IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MSRSRTVRIF WDDPDLTDSS GEDEGCGSGG GRRMGSMVRE LPPAPAPMVQ QAGFAPAAAL  60
PEQCSGGDGD MGRRPVGGGC TAGARRRLTK GGGAGAQSTK FRGVRRRPWG KFAAEIRDPW  120
RGVRVWLGTF DTAEEAARVY DSAAIQLRGP SATTNFSTST ISAGALDPAA VGYESGAESS  180
PAVSSPTSVL RKVPSLSSLA EDKDDYEAGH CEPAAAGSSS LTVLEELGEF VPFEDAPVYG  240
GSSFWDYEPK SGFLYAEPSS PDAPWDAGAT SASWASPVQD QNDYFQDLRD LFPLNPLPAI  300
F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A9e-2391156571Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR01G21530.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006644464.11e-173PREDICTED: pathogenesis-related genes transcriptional activator PTI6-like
TrEMBLA0A0D9V3Q00.0A0A0D9V3Q0_9ORYZ; Uncharacterized protein
STRINGLPERR01G21530.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16903697
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23750.24e-29cytokinin response factor 2