PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G21580.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bZIP
Protein Properties Length: 349aa    MW: 37692.4 Da    PI: 9.7726
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G21580.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_166.74.1e-21214276163
                      XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                      +ke+krerrkq+NRe+ArrsR+RK+ae+eeL++kv+ L+aeN++L+ e+++l++ ++kl+ e+
  LPERR01G21580.1 214 DKESKRERRKQSNRESARRSRLRKQAETEELARKVELLTAENTSLRREISRLTESSKKLRLEN 276
                      689********************************************************9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077779.5E-26185IPR012900G-box binding protein, multifunctional mosaic region
Gene3DG3DSA:1.20.5.1705.0E-17211273No hitNo description
SMARTSM003381.7E-20214278IPR004827Basic-leucine zipper domain
PfamPF001703.7E-19215276IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.599216279IPR004827Basic-leucine zipper domain
SuperFamilySSF579598.13E-11218272No hitNo description
CDDcd147025.07E-21219267No hitNo description
PROSITE patternPS000360221236IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MGNDEAVVTQ KMGKAPSPPK DHPALPYFDW SNMQAYYGPG ILPPTFFGPG IAPGHTPPPF  60
IWGPQPLVPS SFGKPYAAIY PHGGAKSVNS KENCSNKKMK EIDGAAVSTG SGNSEKTSGD  120
CSLEGSSDGN NQKASGTPKK RGIEDRPKSD DKKAINVSPG METGGASTPN DRPSERGTLR  180
NLCIPITAIK PDVSAASDFR IIATPVTEVP TKDDKESKRE RRKQSNRESA RRSRLRKQAE  240
TEELARKVEL LTAENTSLRR EISRLTESSK KLRLENSALM EKLTEAEPDD AQEVPPVKPT  300
AQPARDVENF LSIIEKTSAS RSSGHMDHAK PKLRQLLGTG LATDAVAAR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1230236RRSRLRK
2230237RRSRLRKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR01G21580.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1219250.0AK121925.1 Oryza sativa Japonica Group cDNA clone:J033106G09, full insert sequence.
GenBankAY3331840.0AY333184.1 Oryza sativa (japonica cultivar-group) G-box binding protein mRNA, complete cds.
GenBankAY6069410.0AY606941.1 Oryza sativa (indica cultivar-group) salt-stress inducible bZIP protein mRNA, complete cds.
GenBankCT8338380.0CT833838.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI236J06, full insert sequence.
GenBankEU8470230.0EU847023.1 Oryza sativa Japonica Group clone KCS023B07 G-box binding factor mRNA, partial cds.
GenBankOSU422080.0U42208.1 Oryza sativa GBF type bZIP protein OSBZ8 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650461.10.0common plant regulatory factor 1 isoform X1
RefseqXP_015650471.10.0common plant regulatory factor 1 isoform X1
TrEMBLA0A0D9V3Q70.0A0A0D9V3Q7_9ORYZ; Uncharacterized protein
STRINGLPERR01G21580.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27763888
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46270.11e-45G-box binding factor 3