PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G21790.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family GATA
Protein Properties Length: 239aa    MW: 24424.3 Da    PI: 6.7359
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G21790.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA63.52.5e-20119153135
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                      C+nC tt+TplWR+gp+g+k+LCnaCG++y+k+++
  LPERR01G21790.1 119 CANCDTTSTPLWRNGPRGPKSLCNACGIRYKKEER 153
                      ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577168.08E-15112154No hitNo description
PROSITE profilePS5011414.404113149IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.3E-17113153IPR013088Zinc finger, NHR/GATA-type
SMARTSM004014.4E-21113170IPR000679Zinc finger, GATA-type
CDDcd002021.61E-13118150No hitNo description
PfamPF003205.4E-18119153IPR000679Zinc finger, GATA-type
PROSITE patternPS003440119144IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MLHEAAPCTC GLLYGSCGGG CSLLFPSAGD HHHYYKQYCG GEGEHPVGAG GFDGPYGGGG  60
SVDCTLSLGT PSTRRAEAAV AGMPPWDQSS SLQPGCNGPH DMSGPGGGAA AAASAPRRCA  120
NCDTTSTPLW RNGPRGPKSL CNACGIRYKK EERRAAAAAV APTALASDGG VEYAAYGYPR  180
QQQQWGCYGP AVAKAASFGM FSDAAGEVDG PCLPWGLGVM PSSPAFGAVR EMPSLFQYY
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR01G21790.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0032841e-122AP003284.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0671D01.
GenBankAP0149571e-122AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126091e-122CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638887.11e-117GATA transcription factor 20
TrEMBLA0A0D9V3T21e-171A0A0D9V3T2_9ORYZ; Uncharacterized protein
STRINGLPERR01G21790.11e-172(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP166537102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36620.15e-26GATA transcription factor 19