PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G21930.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family WRKY
Protein Properties Length: 360aa    MW: 38312.8 Da    PI: 7.4232
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G21930.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY105.72.4e-33172229259
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      +Dgy+WrKYGqK vk+s++prsYYrCt+++Cpvkk+vers +dp vv++tYeg+H+h+
  LPERR01G21930.1 172 EDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCPVKKRVERSYQDPAVVITTYEGKHTHP 229
                      8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.0E-35156231IPR003657WRKY domain
SuperFamilySSF1182909.81E-30163231IPR003657WRKY domain
PROSITE profilePS5081132.535166231IPR003657WRKY domain
SMARTSM007742.6E-39171230IPR003657WRKY domain
PfamPF031061.8E-26172229IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MAGEYQFQDE LAPLFARPGE MQQQQQLPAS WFADYLQAAT PTQMDYDLMC RALELPVGED  60
VKREPGVDVV TASGGVAPLT PNTTSSMSTS SSEGGGGGGG GGGGGGAGEE DSPAMCKKEE  120
EDENKEEGKG EEEGHKNKKG SAAKGGKAGK GEKRQRQPRF AFMTKSEVDH LEDGYRWRKY  180
GQKAVKNSPY PRSYYRCTTQ KCPVKKRVER SYQDPAVVIT TYEGKHTHPI PATLRGSTHL  240
LAAHAQAAAH LHHHNLGMPP PLASVRAQFG RAPGGVDLLA GLLQQPRHGA MNPTMGAGAT  300
ATTTTNSMNG AMTSTNTVTV AAATPPPSST ALQMQHFLAQ DFGLLQDILL PSFVHGTSQP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-28162232878Probable WRKY transcription factor 4
2lex_A3e-28162232878Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00440DAPTransfer from AT4G18170Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR01G21930.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3418440.0AY341844.1 Oryza sativa (japonica cultivar-group) WRKY3 mRNA, complete cds.
GenBankAY3418550.0AY341855.1 Oryza sativa (japonica cultivar-group) WRKY14 mRNA, complete cds.
GenBankAY8706040.0AY870604.1 Oryza sativa (japonica cultivar-group) WRKY16 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025875631.11e-126WRKY transcription factor WRKY24-like isoform X2
TrEMBLA0A0D9V3V30.0A0A0D9V3V3_9ORYZ; Uncharacterized protein
STRINGLPERR01G21930.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62337173
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29860.11e-49WRKY DNA-binding protein 71