PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G24170.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bHLH
Protein Properties Length: 469aa    MW: 50057.7 Da    PI: 7.7422
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G24170.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.52.4e-13323369455
                      HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                      +h e+Er+RR+++N++f  Lr ++Pk +      K++Ka+ L  A+ YI++L+
  LPERR01G24170.1 323 NHVEAERQRREKLNQRFYALRAVVPKiS------KMDKASLLSDAIAYIQELE 369
                      799***********************66......****************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.6E-3844219IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.047319368IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.0E-16322371IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.97E-16322373IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.14E-15322372No hitNo description
PfamPF000107.3E-11323369IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-15325374IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MSRSETDAAL FAAVLGHDAA HYLATTPPHL DAPEESASTA ELLARLHDLV ERQGGAWTYG  60
IFWQESRGVL GWGDGHCRDG AVAAGPGEQL GAAAERSVAR KRVLLRLHAL YGGGDDEGAD  120
YALRLDRVTG AEMYFLASMY FSFPEGAGGP GRALATGRHA WAEVDPHPSS GPGWYVRSSL  180
ARSAGLRTVV FLPCKGGVLE LGSLVAFHET PEVLRAIQSA LCAEPAAPPE DFMRIFGKDL  240
SRGAVPMQPS TGCDAPWTPR LVVHPTPAAR PAKRAAKPAE PPKNIDFSTK AANGQVQAAG  300
GGEERRPRKR GRKPANGREE PLNHVEAERQ RREKLNQRFY ALRAVVPKIS KMDKASLLSD  360
AIAYIQELEA RLRGGAGAAV PAARPAVEVK AMQDEVVLRV TTPLDEHPIS GVFHAMRDSQ  420
LSVVASDVAV SEDAVTHTLM VRSPGPERLT AETVLAAMSR GVSVTTPSP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-25317405283Transcription factor MYC2
5gnj_B1e-25317405283Transcription factor MYC2
5gnj_E1e-25317405283Transcription factor MYC2
5gnj_F1e-25317405283Transcription factor MYC2
5gnj_G1e-25317405283Transcription factor MYC2
5gnj_I1e-25317405283Transcription factor MYC2
5gnj_M1e-25317405283Transcription factor MYC2
5gnj_N1e-25317405283Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1304312RRPRKRGRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR01G24170.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628703.10.0transcription factor bHLH13
TrEMBLA0A0D9V4Q00.0A0A0D9V4Q0_9ORYZ; Uncharacterized protein
STRINGLPERR01G24170.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP73852944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.33e-37bHLH family protein