PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G24270.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family MYB_related
Protein Properties Length: 303aa    MW: 32900.5 Da    PI: 10.1019
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G24270.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.26.6e-12556147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                     +++WT eE+e l ++v ++G g W+tI +          R+  ++k++w+++
  LPERR01G24270.1  5 KQKWTSEEEEALRRGVLKHGAGKWRTIQKDPEfspvlSSRSNIDLKDKWRNL 56
                     79***********************************9************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.143160IPR017930Myb domain
SuperFamilySSF466891.45E-14258IPR009057Homeodomain-like
SMARTSM007171.2E-7459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.6E-14556IPR009057Homeodomain-like
PfamPF002492.8E-8556IPR001005SANT/Myb domain
CDDcd116602.89E-20656No hitNo description
SMARTSM005262.2E-12111176IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.102.6E-13112187IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150424.917113181IPR005818Linker histone H1/H5, domain H15
PfamPF005383.2E-8115173IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF466891.45E-14115150IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MGAPKQKWTS EEEEALRRGV LKHGAGKWRT IQKDPEFSPV LSSRSNIDLK DKWRNLSFSA  60
NGLGSRDKLK IPRIKGPSSS TSPSSQTPLL LPPNKVADAL PSAESEKSSQ DPKIPKYSSM  120
VIEALCEIGD PNGSDIDAIC HYIEQRHEVQ ANFRRLLTAK LRRLIAAKKI EKIDRSYKIT  180
ESYAAKASNG TKSPSPKKVL AKPLKASQNL GSSAVNSPAL AAAAAAAMKV ADAEAKAHIA  240
KEQMMEAERI YKLAEETDSL LTLATEIYER SSRGELLSVL QVPQSNFEFK SVNGSGTGST  300
VLA
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but may also bind to the single telomeric strand. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00652PBMTransfer from LOC_Os01g51154Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR01G24270.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ4957970.0AJ495797.1 Oryza sativa Japonica Group mRNA for MYB28 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622156.11e-172single myb histone 4 isoform X1
SwissprotQ6WLH41e-109SMH3_MAIZE; Single myb histone 3
TrEMBLA0A0D9V4R40.0A0A0D9V4R4_9ORYZ; Uncharacterized protein
STRINGLPERR01G24270.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92473442
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72740.23e-50MYB_related family protein
Publications ? help Back to Top
  1. Soderlund C, et al.
    Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.
    PLoS Genet., 2009. 5(11): p. e1000740
    [PMID:19936069]
  2. Schnable PS, et al.
    The B73 maize genome: complexity, diversity, and dynamics.
    Science, 2009. 326(5956): p. 1112-5
    [PMID:19965430]