PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G24650.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family WRKY
Protein Properties Length: 222aa    MW: 23907.8 Da    PI: 8.3138
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G24650.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.29.2e-30136194159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDgy+WrKYG+K+vk+s++pr+YYrC+++gC+vkk+ver+++dp++v+++Y g Hnh 
  LPERR01G24650.1 136 LDDGYKWRKYGKKSVKNSPNPRNYYRCSTEGCNVKKRVERDRNDPRYVVTMYDGIHNHV 194
                      59********************************************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.1E-31123194IPR003657WRKY domain
SuperFamilySSF1182902.35E-26129195IPR003657WRKY domain
PROSITE profilePS5081131.066131196IPR003657WRKY domain
SMARTSM007743.1E-32136195IPR003657WRKY domain
PfamPF031063.8E-23137193IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MAAATGASTP FNFCPHAADV VLSSWMATRP PAPHGGGAFG VAASSGEMML RQQHLDLFDY  60
LSDDQGGAGP ARPAAVPSAS SLFMPPPAMA PAEPVVPDAA AGYPRRVNLL AAAGEGGTTR  120
TTDKIAFRTR SDDEILDDGY KWRKYGKKSV KNSPNPRNYY RCSTEGCNVK KRVERDRNDP  180
RYVVTMYDGI HNHVCPGTVY YATQDAASGR FFVAGMHHPD LN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-23126196777Probable WRKY transcription factor 4
2lex_A2e-23126196777Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR01G24650.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1085551e-136AK108555.1 Oryza sativa Japonica Group cDNA clone:002-144-E10, full insert sequence.
GenBankAY8706091e-136AY870609.1 Oryza sativa (japonica cultivar-group) WRKY26 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008675106.12e-82probable WRKY transcription factor 51
TrEMBLA0A0D9V4X01e-164A0A0D9V4X0_9ORYZ; Uncharacterized protein
STRINGLPERR01G24650.11e-164(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44137206
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26170.12e-35WRKY DNA-binding protein 50