PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G25570.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family WRKY
Protein Properties Length: 304aa    MW: 31899.4 Da    PI: 5.0831
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G25570.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.14.9e-3092150259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                       D ++WrKYGqK++kgs+fpr+YYrC+s+ gCp++k+vers+ dp++v++tY+ eHnh+
  LPERR01G25570.1  92 TDSWAWRKYGQKPIKGSPFPRAYYRCSSSkGCPARKQVERSRVDPDTVIVTYSFEHNHS 150
                      69*************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081130.97486152IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.3E-3088150IPR003657WRKY domain
SuperFamilySSF1182904.97E-2589150IPR003657WRKY domain
SMARTSM007745.9E-3691151IPR003657WRKY domain
PfamPF031061.4E-2593149IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MEGEWSDGAV SSPTMSGGGV EQKAGENGVV VAAANCPGSP LSPSPAAQRS AAAASPSGRP  60
PRRSAQKRVV TVALADVSGP RPKGVGEGNT PTDSWAWRKY GQKPIKGSPF PRAYYRCSSS  120
KGCPARKQVE RSRVDPDTVI VTYSFEHNHS ATVPRAQNRQ AAAQKPKSQS QKCPRPPEPA  180
ESEEKHHDAI AVGPVTVTGG AAAIEVRDEF RWLYDVVSVT SSTSPSDIDG ADDMQLFDQP  240
MFFGGAVVDT AALLPDEFGD AVGGGGEGLG DEEAMFEGLG ELPECAMVFR RRAGEQPAEG  300
TAMT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A7e-17931491671WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR01G25570.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1097701e-140AK109770.1 Oryza sativa Japonica Group cDNA clone:002-147-A06, full insert sequence.
GenBankAY8706031e-140AY870603.1 Oryza sativa (japonica cultivar-group) WRKY14 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624912.11e-137probable WRKY transcription factor 65
TrEMBLA0A0D9V5A10.0A0A0D9V5A1_9ORYZ; Uncharacterized protein
STRINGLPERR01G25570.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP109473341
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58710.15e-38WRKY DNA-binding protein 69