PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G25670.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family HSF
Protein Properties Length: 250aa    MW: 27121 Da    PI: 9.5585
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G25670.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind103.12.5e-32261182103
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      F+ k++++++d++++ +++w   gn+f+vld+  f+  +Lp+yFkh+nfaSFvRQLn+YgF+kv+ +          weF+h+sF +g+ +ll 
  LPERR01G25670.1  26 FVAKTFHMVSDPSTNAVVRWGGAGNTFLVLDPAAFSGFLLPSYFKHRNFASFVRQLNTYGFRKVDPDM---------WEFAHESFLRGQAHLLP 110
                      9***************************************************************9988.........***************** PP

                      XXXXXXXX CS
     HSF_DNA-bind  96 kikrkkse 103
                      +i rkk++
  LPERR01G25670.1 111 RIMRKKKK 118
                      *****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.106.1E-3521109IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.7E-4922115IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.09E-3123115IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.7E-172649IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.2E-2826115IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.7E-176476IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406589IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.7E-177789IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006970Biological Processresponse to osmotic stress
GO:0009737Biological Processresponse to abscisic acid
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MMGTECKVHQ LQAAGDGGGP GAVAPFVAKT FHMVSDPSTN AVVRWGGAGN TFLVLDPAAF  60
SGFLLPSYFK HRNFASFVRQ LNTYGFRKVD PDMWEFAHES FLRGQAHLLP RIMRKKKKAG  120
ASSGRELCEE GEEVRGTIQT VQRLRDEQRG MEEELQAMDR RLRAAESRPG QMMAFLAKLA  180
DEPGVVLRAM LAKKEELAAA GNNGSDPCKR RRIGSDAGRG GVATGGDAAE LAQGMGAVPF  240
PFSVLGQVFY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-261811512120Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1208212KRRRI
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR01G25670.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0663160.0AK066316.1 Oryza sativa Japonica Group cDNA clone:J013066G03, full insert sequence.
GenBankAY3444930.0AY344493.1 Oryza sativa (japonica cultivar-group) heat shock factor RHSF11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633152.11e-166heat stress transcription factor C-1b
SwissprotQ942D61e-167HFC1B_ORYSJ; Heat stress transcription factor C-1b
TrEMBLA0A0D9V5B00.0A0A0D9V5B0_9ORYZ; Uncharacterized protein
STRINGLPERR01G25670.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP112983141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.16e-60heat shock transcription factor C1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Schmidt R, et al.
    Transcription factor OsHsfC1b regulates salt tolerance and development in Oryza sativa ssp. japonica.
    AoB Plants, 2012. 2012: p. pls011
    [PMID:22616023]