PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G25700.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family WRKY
Protein Properties Length: 239aa    MW: 26185.4 Da    PI: 7.2895
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G25700.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.61.1e-32160218159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDgy+WrKYGqK vk+s++prsYYrCt+++C+vkk+v+r a+d+++v++tYeg Hnh+
  LPERR01G25700.1 160 LDDGYRWRKYGQKAVKNSKHPRSYYRCTHHTCNVKKQVQRLAKDTSIVVTTYEGVHNHP 218
                      59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-33146218IPR003657WRKY domain
SuperFamilySSF1182901.09E-28153219IPR003657WRKY domain
PROSITE profilePS5081128.885155220IPR003657WRKY domain
SMARTSM007741.1E-38160219IPR003657WRKY domain
PfamPF031063.9E-26161218IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006412Biological Processtranslation
GO:0005840Cellular Componentribosome
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0003735Molecular Functionstructural constituent of ribosome
GO:0019843Molecular FunctionrRNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MEINLQGDDH DEAQAAPTLP HFPYFAVPVD STMSDGQHGP TLDALGPPPP CNHPGGLDGT  60
PQLTTTTSAA VPMMLPAMTP LDWQSLLQTC LQVQPPVLEQ QQAAADQCSG ENDHGDQAGE  120
SSGAVNKEKQ LAKGGAGRSG KKKATRPRFA FQTKSDNDIL DDGYRWRKYG QKAVKNSKHP  180
RSYYRCTHHT CNVKKQVQRL AKDTSIVVTT YEGVHNHPCE KLMEALTPIL KQLQFLSQF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-24150217774Probable WRKY transcription factor 4
2lex_A3e-24150217774Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00539DAPTransfer from AT5G41570Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR01G25700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1089091e-175AK108909.1 Oryza sativa Japonica Group cDNA clone:002-152-G06, full insert sequence.
GenBankAY3418451e-175AY341845.1 Oryza sativa (japonica cultivar-group) WRKY4 mRNA, complete cds.
GenBankAY8706071e-175AY870607.1 Oryza sativa (japonica cultivar-group) WRKY23 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006646294.11e-122PREDICTED: probable WRKY transcription factor 56
TrEMBLA0A0D9V5B51e-179A0A0D9V5B5_9ORYZ; Uncharacterized protein
STRINGLPERR01G25700.21e-180(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP110038133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46130.19e-56WRKY DNA-binding protein 43