PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR01G28060.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

LBD

Protein Properties

Length: 244aa MW: 25701 Da PI: 6.7647

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR01G28060.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	109.4	2.6e-34	40	154	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyf...............paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgv 79 +C aCk+lrr+C+++Cv+ap+f ++ +++fa+vh++FGasnv kll+++p r+da+++++yeA+ar+ dPvyG+vg+ LPERR01G28060.1 40 PCGACKFLRRRCVPGCVFAPHFsgcggsgvgagagrgRERGAAEFAAVHRVFGASNVAKLLSRVPAALRRDAARTVCYEAQARIADPVYGSVGT 133 7*****************************9988555559************************************************ PP DUF260 80 ilklqqqleqlkaelallkee 100 il+lq+q++ l+ +l++l+++ LPERR01G28060.1 134 ILALQHQVSVLQGQLSVLESQ 154 *************999887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	20.638	39	155	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.6E-38	40	152	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 244 aa Download sequence Send to blast
MHAAQPTGSS KRRVGAAPAV ERPAAAEEEE ASSSAGPGAP CGACKFLRRR CVPGCVFAPH 60 FSGCGGSGVG AGAGRGRERG AAEFAAVHRV FGASNVAKLL SRVPAALRRD AARTVCYEAQ 120 ARIADPVYGS VGTILALQHQ VSVLQGQLSV LESQLFNLRL ALASAHPDTP QHFVVLQPAC 180 SAASTPNQVA VNYDDLPQAV DFMDAEPALR GIETLQLSQP LRREEDESCQ DMNLFAESVE 240 QRQL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	4e-33	31	156	2	112	LOB family transfactor Ramosa2.1
5ly0_B	4e-33	31	156	2	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR01G28060.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK242468	0.0	AK242468.1 Oryza sativa Japonica Group cDNA, clone: J080302F02, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015630092.1	1e-123	LOB domain-containing protein 20
Swissprot	Q9SRV3	3e-46	LBD20_ARATH; LOB domain-containing protein 20
TrEMBL	A0A0D9V6A3	1e-174	A0A0D9V6A3_9ORYZ; Uncharacterized protein
STRING	LPERR01G28060.1	1e-175	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP14085	25	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03760.1	6e-39	LOB domain-containing protein 20